Class ModelSEIRDCONN¶

Template for a Susceptible-Exposed-Infected-Removed-Deceased (SEIRD) model with connected population. More...

#include <seirdconnected.hpp>

Inherits the following classes: epiworld::Model< EPI_DEFAULT_TSEQ >

Public Static Attributes¶

Type	Name
const int	DECEASED = `4`
const int	EXPOSED = `1`
const int	INFECTED = `2`
const int	REMOVED = `3`
const int	SUSCEPTIBLE = `0`

Public Functions¶

Type	Name
	ModelSEIRDCONN ()
	ModelSEIRDCONN (ModelSEIRDCONN< TSeq > & model, const std::string & vname, epiworld_fast_uint n, epiworld_double prevalence, epiworld_double contact_rate, epiworld_double transmission_rate, epiworld_double avg_incubation_days, epiworld_double recovery_rate, epiworld_double death_rate) Template for a Susceptible-Exposed-Infected-Removed (SEIR) model.
	ModelSEIRDCONN (const std::string & vname, epiworld_fast_uint n, epiworld_double prevalence, epiworld_double contact_rate, epiworld_double transmission_rate, epiworld_double avg_incubation_days, epiworld_double recovery_rate, epiworld_double death_rate)
Model< TSeq > *	clone_ptr ()
size_t	get_n_infected () const
ModelSEIRDCONN< TSeq > &	initial_states (std::vector< double > proportions_, std::vector< int > queue_={}) Set up the initial states of the model.
void	reset ()
ModelSEIRDCONN< TSeq > &	run (epiworld_fast_uint ndays, int seed=-1)

Detailed Description¶

Public Static Attributes Documentation¶

variable DECEASED¶

const int ModelSEIRDCONN< TSeq >::DECEASED;

variable EXPOSED¶

const int ModelSEIRDCONN< TSeq >::EXPOSED;

variable INFECTED¶

const int ModelSEIRDCONN< TSeq >::INFECTED;

variable REMOVED¶

const int ModelSEIRDCONN< TSeq >::REMOVED;

variable SUSCEPTIBLE¶

const int ModelSEIRDCONN< TSeq >::SUSCEPTIBLE;

Public Functions Documentation¶

function ModelSEIRDCONN [1/3]¶

inline ModelSEIRDCONN::ModelSEIRDCONN ()

function ModelSEIRDCONN [2/3]¶

Template for a Susceptible-Exposed-Infected-Removed (SEIR) model.

inline ModelSEIRDCONN::ModelSEIRDCONN (
    ModelSEIRDCONN < TSeq > & model,
    const std::string & vname,
    epiworld_fast_uint n,
    epiworld_double prevalence,
    epiworld_double contact_rate,
    epiworld_double transmission_rate,
    epiworld_double avg_incubation_days,
    epiworld_double recovery_rate,
    epiworld_double death_rate
)

Parameters:

model A Model<TSeq> object where to set up the SIR.
vname std::string Name of the virus
prevalence Initial prevalence (proportion)
contact_rate Average number of contacts (interactions) per step.
transmission_rate Probability of transmission
recovery_rate Probability of recovery
death_rate Probability of death

function ModelSEIRDCONN [3/3]¶

inline ModelSEIRDCONN::ModelSEIRDCONN (
    const std::string & vname,
    epiworld_fast_uint n,
    epiworld_double prevalence,
    epiworld_double contact_rate,
    epiworld_double transmission_rate,
    epiworld_double avg_incubation_days,
    epiworld_double recovery_rate,
    epiworld_double death_rate
)

function clone_ptr¶

inline Model < TSeq > * ModelSEIRDCONN::clone_ptr ()

function get_n_infected¶

inline size_t ModelSEIRDCONN::get_n_infected () const

function initial_states¶

Set up the initial states of the model.

inline ModelSEIRDCONN < TSeq > & ModelSEIRDCONN::initial_states (
    std::vector< double > proportions_,
    std::vector< int > queue_={}
)

Parameters:

proportions_ Double vector with the following values:
0: Proportion of non-infected agents who are removed.
1: Proportion of exposed agents to be set as infected.

function reset¶

inline void ModelSEIRDCONN::reset ()

function run¶

inline ModelSEIRDCONN < TSeq > & ModelSEIRDCONN::run (
    epiworld_fast_uint ndays,
    int seed=-1
)

The documentation for this class was generated from the following file include/epiworld/models/seirdconnected.hpp