Class Members

a

• AdjList (AdjList)
• Agent (Agent)
• add_entity (Agent, Model)
• add_neighbor (Agent)
• add_tool (Agent, Model)
• AgentsSample (AgentsSample)
• agent (AgentsSample, Event, Tool, Virus)
• agents (AgentsSample, Entity)
• agents_left (AgentsSample)
• agents_left_n (AgentsSample)
• agents_n (AgentsSample)
• add_contact (ContactTracing)
• add_user_data (DataBase, Model)
• add_agent (Entity)
• action (Event)
• agent_recovers (InterventionMeaslesPEP)
• add_globalevent (Model)
• add_param (Model)
• add_state (Model)
• add_virus (Model)
• agents_bernoulli (Model)
• agents_data (Model)
• agents_data_ncols (Model)
• agents_empty_graph (Model)
• agents_from_adjlist (Model)
• agents_from_edgelist (Model)
• agents_sbm (Model)
• agents_smallworld (Model)
• array_double_tmp (Model)
• array_virus_tmp (Model)
• ADOPTER (ModelDiffNet)
• adjusted_contact_rate (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelSEIRMixing, ModelSEIRMixingQuarantine, ModelSIRMixing)
• agent_quarantine_triggered (ModelMeaslesMixing, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine)
• agents_checked_contact_tracing (ModelMeaslesMixingRiskQuarantine)
• agents_triggered_contact_tracing (ModelMeaslesMixingRiskQuarantine)
• agents_triggered_contact_tracing_size (ModelMeaslesMixingRiskQuarantine)
• ASYMPTOMATIC (ModelSURV)
• ASYMPTOMATIC_ISOLATED (ModelSURV)
• add_triggering_agent (QuarantineTrigger)
• active (Queue)
• AGENT (SAMPLETYPE)
• add (UserData)

b

• begin (AgentsSample, Entity, Viruses, Viruses_const)

c

• change_state (Agent)
• ContactTracing (ContactTracing)
• contact_date (ContactTracing)
• contact_matrix (ContactTracing, ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelSEIRMixing, ModelSEIRMixingQuarantine, ModelSIRMixing)
• contacts_per_agent (ContactTracing)
• check (EpiAssert)
• check_bounds (EpiAssert)
• check_non_negative (EpiAssert)
• check_probability (EpiAssert)
• check_size (EpiAssert)
• check_sum (EpiAssert)
• clone_ptr (GlobalEvent, InterventionMeaslesPEP, Model, ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool, ModelSEIRCONN, ModelSEIRDCONN, ModelSEIRMixing, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine, ModelSIRCONN, ModelSIRDCONN, ModelSIRLogit, ModelSIRMixing, Tool, ToolImmunoglobulin, ToolVaccine, Virus)
• chrono_end (LFMCMC, Model)
• chrono_start (LFMCMC, Model)
• clear_state_set (Model)
• contact_tracing (Model)
• contact_tracing_max_contacts (Model)
• contact_tracing_off (Model)
• contact_tracing_on (Model)
• current_date (Model)
• clear (ModelDiagram)
• coef_infect_cols (ModelSIRLogit)
• coef_recover_cols (ModelSIRLogit)
• coefs_infect (ModelSIRLogit)
• coefs_recover (ModelSIRLogit)
• cur_loc (Progress)

d

• dat (AdjList, Viruses, Viruses_const)
• directed (AdjList, Model)
• DataBase (DataBase)
• dist_fun (Entity)
• distribute (Entity, Tool, Virus)
• day (GlobalEvent)
• db (Model)
• death_reduction_mixer (Model)
• dist_entities (Model)
• dist_tools (Model)
• dist_virus (Model)
• draw (Model, ModelDiagram)
• data (ModelDiagram)
• draw_dot (ModelDiagram)
• draw_from_data (ModelDiagram)
• draw_from_file (ModelDiagram)
• draw_from_files (ModelDiagram)
• draw_mermaid (ModelDiagram)
• data_cols (ModelDiffNet)
• day_flagged (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine)
• day_latent (ModelMeaslesMixing)
• day_rash_onset (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool)
• days_quarantine_triggered (ModelMeaslesMixingRiskQuarantine)
• DECEASED (ModelSEIRD, ModelSEIRDCONN, ModelSIRDCONN)
• day_exposed (ModelSEIRMixingQuarantine)
• day_onset (ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine)
• DETECTED_HOSPITALIZED (ModelSEIRNetworkQuarantine)
• days_latent_and_infectious (ModelSURV)
• date (Tool, Virus)
• death_reduction (Tool)
• dist (Tool, Virus)
• data_data (UserData)
• data_dates (UserData)
• data_names (UserData)

e

• E (AdjList)
• ecount (AdjList)
• entities (Agent, Model)
• end (AgentsSample, Entity, Viruses, Viruses_const)
• entity (AgentsSample, Event)
• Entity (Entity)
• entity_name (Entity)
• Event (Event)
• engine (Model)
• events (Model)
• events_run (Model)
• entity_indices (ModelMeaslesMixing, ModelSEIRMixing, ModelSEIRMixingQuarantine, ModelSIRMixing)
• EXPOSED (ModelSEIR, ModelSEIRCONN, ModelSEIRD, ModelSEIRDCONN, ModelSEIRMixing, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine)
• Everyone (Queue)
• ENTITY (SAMPLETYPE)
• EPI_TYPENAME_TRAITS (Tool, Virus)
• epi_xoshiro256ss (epi_xoshiro256ss)

f

• fmt_location (EpiAssert)
• fun (GlobalEvent)

g

• get_dat (AdjList)
• get_death_reduction (Agent, Tool)
• get_entities (Agent, Model)
• get_entity (Agent, Model)
• get_id (Agent, Entity, Tool, Virus)
• get_n_entities (Agent, Model)
• get_n_neighbors (Agent)
• get_n_tools (Agent, DataBase, Model)
• get_neighbors (Agent)
• get_recovery_enhancer (Agent, Tool)
• get_state (Agent, Entity, Tool, Virus)
• get_state_last_changed (Agent)
• get_state_prev (Agent)
• get_susceptibility_reduction (Agent, Tool, ToolImmunoglobulin, ToolVaccine)
• get_tool (Agent, Model)
• get_tools (Agent, Model)
• get_transmission_reduction (Agent, Tool)
• get_virus (Agent, Model)
• get_contact (ContactTracing)
• get_location (ContactTracing, Entity)
• get_max_contacts (ContactTracing)
• get_n_contacts (ContactTracing)
• get_active_cases (DataBase)
• get_generation_time (DataBase)
• get_hist_tool (DataBase)
• get_hist_total (DataBase)
• get_hist_transition_matrix (DataBase)
• get_hist_virus (DataBase)
• get_hospitalizations (DataBase, Model)
• get_model (DataBase)
• get_n_viruses (DataBase, Model)
• get_nexposed (DataBase)
• get_outbreak_size (DataBase)
• get_reproductive_number (DataBase)
• get_sequence (DataBase)
• get_today_total (DataBase)
• get_today_transition_matrix (DataBase)
• get_today_virus (DataBase)
• get_transition_probability (DataBase)
• get_transmissions (DataBase)
• get_user_data (DataBase, Model)
• get_agents (Entity, Model)
• get_agents_ids (Entity)
• get_name (Entity, GlobalEvent, Model, Tool, Virus)
• get_queue (Entity, Model, Tool, Virus)
• GlobalEvent (GlobalEvent)
• get_day (GlobalEvent)
• get (HospitalizationsTracker)
• get_all_accepted_kernel_scores (LFMCMC)
• get_all_accepted_params (LFMCMC)
• get_all_accepted_stats (LFMCMC)
• get_all_sample_acceptance (LFMCMC)
• get_all_sample_drawn_prob (LFMCMC)
• get_all_sample_kernel_scores (LFMCMC)
• get_all_sample_params (LFMCMC)
• get_all_sample_stats (LFMCMC)
• get_current_accepted_params (LFMCMC)
• get_current_accepted_stats (LFMCMC)
• get_current_proposed_params (LFMCMC)
• get_current_proposed_stats (LFMCMC)
• get_elapsed_time (LFMCMC)
• get_epsilon (LFMCMC)
• get_initial_params (LFMCMC)
• get_mean_params (LFMCMC)
• get_mean_stats (LFMCMC)
• get_n_params (LFMCMC)
• get_n_samples (LFMCMC)
• get_n_stats (LFMCMC)
• get_observed_stats (LFMCMC)
• get_rand_endgine (LFMCMC, Model)
• get_simulated_data (LFMCMC)
• get_agent (Model, Tool, Virus)
• get_agents_data (Model)
• get_agents_data_ncols (Model)
• get_agents_states (Model)
• get_agents_viruses (Model)
• get_contact_tracing (Model)
• get_db (Model)
• get_elapsed (Model)
• get_globalevent (Model)
• get_n_replicates (Model)
• get_n_states (Model)
• get_ndays (Model)
• get_param (Model)
• get_rewire_prop (Model)
• get_sim_id (Model)
• get_state_fun (Model)
• get_states (Model)
• get_verbose (Model)
• get_viruses (Model)
• globalevents (Model)
• get_agent_quarantine_triggered (ModelMeaslesMixing, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine)
• get_contact_matrix (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelSEIRMixingQuarantine)
• get_isolation_willingness (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine)
• get_quarantine_willingness (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine)
• get_days_quarantine_triggered (ModelMeaslesMixingRiskQuarantine)
• get_quarantine_risk_level (ModelMeaslesMixingRiskQuarantine)
• generation_time_expected (ModelSEIRCONN, ModelSIRCONN)
• get_n_infected (ModelSEIRCONN, ModelSEIRDCONN, ModelSIRCONN, ModelSIRMixing)
• get_date_infectious (QuarantineTrigger)
• get_triggering_agents (QuarantineTrigger)
• get_date (Tool, Virus)
• get_all (UserData)
• get_data (UserData)
• get_dates (UserData)
• get_names (UserData)
• get_incubation (Virus)
• get_prob_death (Virus)
• get_prob_infecting (Virus)
• get_prob_recovery (Virus)

h

• has_entity (Agent)
• has_tool (Agent, Model)
• has_virus (Agent, Model)
• hist_tool_counts (DataBase)
• hist_tool_date (DataBase)
• hist_tool_id (DataBase)
• hist_tool_state (DataBase)
• hist_total_counts (DataBase)
• hist_total_date (DataBase)
• hist_total_nviruses_active (DataBase)
• hist_total_state (DataBase)
• hist_transition_matrix (DataBase)
• hist_virus_counts (DataBase)
• hist_virus_date (DataBase)
• hist_virus_id (DataBase)
• hist_virus_state (DataBase)
• HospitalizationsTracker (HospitalizationsTracker)
• HOSPITALIZED (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine)
• has_pep (ModelMeaslesSchool)

i

• is_directed (AdjList, Model)
• id (Agent, Entity, Tool, Virus)
• InterventionMeaslesPEP (InterventionMeaslesPEP)
• initial_states (Model, ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelSEIR, ModelSEIRCONN, ModelSEIRD, ModelSEIRDCONN, ModelSEIRMixing, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine, ModelSIR, ModelSIRCONN, ModelSIRD, ModelSIRMixing)
• initial_states_fun (Model)
• is_contact_tracing_on (Model)
• is_queuing_on (Model)
• ISOLATED (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine)
• ISOLATED_RECOVERED (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine)
• infectious (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool)
• isolation_willingness (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine)
• infectious_entity_indices (ModelMeaslesMixingRiskQuarantine)
• INFECTED (ModelSEIR, ModelSEIRCONN, ModelSEIRD, ModelSEIRDCONN, ModelSEIRMixing, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine, ModelSIRCONN, ModelSIRDCONN, ModelSIRLogit, ModelSIRMixing, ModelSIS)
• infected (ModelSEIRCONN, ModelSEIRDCONN, ModelSEIRMixing, ModelSEIRMixingQuarantine, ModelSIRCONN, ModelSIRMixing)
• index (ModelSIRMixing)
• i (Progress)
• incubation (Virus)

k

• k (UserData)

l

• location (Entity)
• LFMCMC (LFMCMC)
• last_seed (Model)
• load_agents_entities_ties (Model)
• LATENT (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool, ModelSURV)
• last_loc (Progress)
• last_day (UserData)

m

• mutate_virus (Agent, Model)
• model (AgentsSample, DataBase, Queue, UserData)
• max_contacts (ContactTracing)
• m_hospitalizations (DataBase)
• max_capacity (Entity)
• model_id (InterventionMeaslesPEP)
• m_all_accepted_kernel_scores (LFMCMC)
• m_all_accepted_params (LFMCMC)
• m_all_accepted_stats (LFMCMC)
• m_all_sample_acceptance (LFMCMC)
• m_all_sample_drawn_prob (LFMCMC)
• m_all_sample_kernel_scores (LFMCMC)
• m_all_sample_params (LFMCMC)
• m_all_sample_stats (LFMCMC)
• m_current_accepted_params (LFMCMC)
• m_current_accepted_stats (LFMCMC)
• m_current_proposed_params (LFMCMC)
• m_current_proposed_stats (LFMCMC)
• m_elapsed_time (LFMCMC)
• m_end_time (LFMCMC)
• m_engine (LFMCMC)
• m_epsilon (LFMCMC)
• m_initial_params (LFMCMC)
• m_kernel_fun (LFMCMC)
• m_n_params (LFMCMC)
• m_n_samples (LFMCMC)
• m_n_stats (LFMCMC)
• m_observed_data (LFMCMC)
• m_observed_stats (LFMCMC)
• m_param_names (LFMCMC)
• m_proposal_fun (LFMCMC)
• m_simulated_data (LFMCMC)
• m_simulation_fun (LFMCMC)
• m_start_time (LFMCMC)
• m_stat_names (LFMCMC)
• m_summary_fun (LFMCMC)
• Model (Model)
• ModelDiagram (ModelDiagram)
• ModelDiffNet (ModelDiffNet)
• ModelMeaslesMixing (ModelMeaslesMixing)
• ModelMeaslesMixingRiskQuarantine (ModelMeaslesMixingRiskQuarantine)
• m_add_contact_tracing (ModelMeaslesMixingRiskQuarantine)
• m_get_risk_period (ModelMeaslesMixingRiskQuarantine)
• ModelMeaslesSchool (ModelMeaslesSchool)
• ModelSEIR (ModelSEIR)
• ModelSEIRCONN (ModelSEIRCONN)
• ModelSEIRD (ModelSEIRD)
• ModelSEIRDCONN (ModelSEIRDCONN)
• ModelSEIRMixing (ModelSEIRMixing)
• ModelSEIRMixingQuarantine (ModelSEIRMixingQuarantine)
• ModelSEIRNetworkQuarantine (ModelSEIRNetworkQuarantine)
• ModelSIR (ModelSIR)
• ModelSIRCONN (ModelSIRCONN)
• ModelSIRD (ModelSIRD)
• ModelSIRDCONN (ModelSIRDCONN)
• ModelSIRLogit (ModelSIRLogit)
• ModelSIRMixing (ModelSIRMixing)
• ModelSIS (ModelSIS)
• ModelSISD (ModelSISD)
• ModelSURV (ModelSURV)
• MODEL (SAMPLETYPE)
• mutate (Virus)
• mutation (Virus)
• max (epi_xoshiro256ss)
• min (epi_xoshiro256ss)

n

• N (AdjList)
• n_neighbors (Agent)
• neighbors (Agent)
• neighbors_locations (Agent)
• n_agents (ContactTracing)
• new_state (Event)
• name (GlobalEvent, Model)
• n_replicates (Model)
• nactions (Model)
• ndays (Model)
• next (Model, ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool, ModelSEIRMixingQuarantine, Progress)
• nstates (Model)
• n_runs (ModelDiagram)
• NONADOPTER (ModelDiffNet)
• normalize_exposure (ModelDiffNet)
• n_infectious_per_group (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine)
• n_infected_per_group (ModelSEIRMixing, ModelSEIRMixingQuarantine, ModelSIRMixing)
• n_infected (ModelSIRMixing)
• n (Progress, UserData)
• NoOne (Queue)
• n_in_queue (Queue)
• ncol (UserData)
• nrow (UserData)
• n_viruses (Viruses, Viruses_const)

o

• operator() (AdjList, Agent, AgentsSample, GlobalEvent, InterventionMeaslesPEP, Model, UserData, Viruses, Viruses_const, epi_xoshiro256ss, vecHasher)
• operator= (AdjList, Agent, Model)
• operator!= (Agent, DataBase, Entity, GlobalEvent, Model, Queue, Tool, Virus)
• operator== (Agent, DataBase, Entity, GlobalEvent, Model, Queue, Tool, Virus)
• operator[] (AgentsSample, Entity, Queue, Viruses, Viruses_const)
• OnlySelf (Queue)
• operator+= (Queue)
• operator-= (Queue)

p

• print (AdjList, Agent, ContactTracing, Entity, GlobalEvent, LFMCMC, Model, Tool, UserData, Virus, Viruses, Viruses_const)
• progress_bar (LFMCMC)
• par (Model)
• parameters (Model)
• params (Model, ModelDiffNet)
• pb (Model)
• population (Model)
• population_backup (Model)
• population_left (Model)
• population_left_n (Model)
• print_state_codes (Model)
• PRODROMAL (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool)
• Progress (Progress)
• pos_in_agent (Tool)
• post_recovery (Virus)
• post_recovery_fun (Virus)
• probability_of_death (Virus)
• probability_of_infecting (Virus)
• probability_of_recovery (Virus)

q

• queue_init (Entity, Tool, Virus)
• queue_post (Entity, Tool, Virus)
• queue (Event, Model)
• queuing_off (Model)
• queuing_on (Model)
• QUARANTINED_LATENT (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool)
• QUARANTINED_PRODROMAL (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool)
• QUARANTINED_RECOVERED (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool)
• QUARANTINED_SUSCEPTIBLE (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine)
• QUARANTINE_PROCESS_ACTIVE (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine)
• QUARANTINE_PROCESS_DONE (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine)
• QUARANTINE_PROCESS_INACTIVE (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine)
• quarantine_willingness (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine)
• quarantine_risk_level (ModelMeaslesMixingRiskQuarantine)
• QUARANTINED_EXPOSED (ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine)
• QuarantineTrigger (QuarantineTrigger)
• queue_removed (Virus)

r

• read_edgelist (AdjList)
• reset (Agent, ContactTracing, DataBase, Entity, HospitalizationsTracker, Model, ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool, ModelSEIRCONN, ModelSEIRDCONN, ModelSEIRMixing, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine, ModelSIRCONN, ModelSIRLogit, ModelSIRMixing, ModelSURV, Queue)
• rm_agent_by_virus (Agent)
• rm_entity (Agent, Model)
• rm_tool (Agent, Model)
• rm_virus (Agent, Model)
• record (DataBase, HospitalizationsTracker)
• record_hospitalization (DataBase, Model)
• record_tool (DataBase)
• record_transition (DataBase)
• record_transmission (DataBase)
• record_virus (DataBase)
• rm_agent (Entity)
• rgamma (LFMCMC, Model)
• rgammad (LFMCMC, Model)
• rnorm (LFMCMC, Model)
• rnormd (LFMCMC, Model)
• run (LFMCMC, Model)
• runif (LFMCMC, Model)
• rbinom (Model)
• rbinomd (Model)
• rbinomd_fast_lambda (Model)
• rbinomd_n (Model)
• rbinomd_use_poisson (Model)
• read_params (Model)
• recovery_enhancer_mixer (Model)
• rewire (Model)
• rewire_fun (Model)
• rewire_prop (Model)
• rexp (Model)
• rexpd (Model)
• rgeom (Model)
• rgeomd (Model)
• rlognormal (Model)
• rlognormald (Model)
• rm_globalevent (Model)
• rnbinom (Model)
• rnbinomd (Model)
• rpoiss (Model)
• rpoissd (Model)
• run_globalevents (Model)
• run_multiple (Model)
• runif_index (Model)
• runif_int (Model)
• runifd_a (Model)
• runifd_b (Model)
• read_transitions (ModelDiagram)
• RASH (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool)
• RECOVERED (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool, ModelSEIRCONN, ModelSEIRMixing, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine, ModelSIRCONN, ModelSIRDCONN, ModelSIRLogit, ModelSIRMixing, ModelSURV)
• RISK_HIGH (ModelMeaslesMixingRiskQuarantine)
• RISK_LOW (ModelMeaslesMixingRiskQuarantine)
• RISK_MEDIUM (ModelMeaslesMixingRiskQuarantine)
• REMOVED (ModelSEIR, ModelSEIRD, ModelSEIRDCONN, ModelSURV)
• recovery_enhancer (Tool)
• result_type (epi_xoshiro256ss)
• rotl (epi_xoshiro256ss)

s

• set_virus (Agent)
• state (Agent)
• state_last_changed (Agent)
• state_prev (Agent)
• swap_neighbors (Agent)
• sample_n (AgentsSample)
• sample_size (AgentsSample)
• sample_type (AgentsSample)
• size (AgentsSample, DataBase, Entity, HospitalizationsTracker, Model, Viruses, Viruses_const)
• states (AgentsSample, ModelDiagram)
• sampling_freq (DataBase)
• seq_hasher (DataBase)
• seq_writer (DataBase)
• set_seq_hasher (DataBase)
• set_user_data (DataBase, Model)
• set_distribution (Entity, Tool, Virus)
• set_location (Entity)
• set_queue (Entity, Tool, Virus)
• set_state (Entity, Tool, Virus)
• state_init (Entity, Tool, Virus)
• state_post (Entity, Tool, Virus)
• set_day (GlobalEvent)
• set_name (GlobalEvent, Model, Tool, Virus)
• seed (LFMCMC, Model, epi_xoshiro256ss)
• set_kernel_fun (LFMCMC)
• set_observed_data (LFMCMC)
• set_params_names (LFMCMC)
• set_proposal_fun (LFMCMC)
• set_rand_engine (LFMCMC, Model)
• set_rand_gamma (LFMCMC, Model)
• set_simulation_fun (LFMCMC)
• set_stats_names (LFMCMC)
• set_summary_fun (LFMCMC)
• sample_from_probs (Model)
• sampled_population (Model)
• sampled_population_n (Model)
• set_agents_data (Model)
• set_backup (Model)
• set_ndays (Model)
• set_param (Model)
• set_rand_binom (Model)
• set_rand_exp (Model)
• set_rand_geom (Model)
• set_rand_lognormal (Model)
• set_rand_nbinom (Model)
• set_rand_norm (Model)
• set_rand_poiss (Model)
• set_rand_unif (Model)
• set_rewire_fun (Model)
• set_rewire_prop (Model)
• set_sim_id (Model)
• set_state_function (Model)
• sim_id (Model)
• state_fun (Model)
• state_of (Model)
• states_labels (Model)
• susceptibility_reduction_mixer (Model)
• SUSCEPTIBLE (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool, ModelSEIR, ModelSEIRCONN, ModelSEIRD, ModelSEIRDCONN, ModelSEIRMixing, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine, ModelSIRCONN, ModelSIRDCONN, ModelSIRLogit, ModelSIRMixing, ModelSIS, ModelSURV)
• sample_agents (ModelMeaslesMixing, ModelSEIRMixing, ModelSIRMixing)
• sampled_agents (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelSEIRMixing, ModelSEIRMixingQuarantine, ModelSIRMixing)
• set_contact_matrix (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelSEIRMixing, ModelSEIRMixingQuarantine, ModelSIRMixing)
• sample_infectious_agents (ModelMeaslesMixingRiskQuarantine)
• SYMPTOMATIC (ModelSURV)
• SYMPTOMATIC_ISOLATED (ModelSURV)
• start (Progress)
• step_size (Progress)
• set_agent (Tool, Virus)
• set_date (Tool, Virus)
• set_death_reduction (Tool)
• set_death_reduction_fun (Tool)
• set_id (Tool, Virus)
• set_recovery_enhancer (Tool)
• set_recovery_enhancer_fun (Tool)
• set_sequence (Tool, Virus)
• set_susceptibility_reduction (Tool, ToolImmunoglobulin, ToolVaccine)
• set_susceptibility_reduction_fun (Tool, ToolImmunoglobulin, ToolVaccine)
• set_transmission_reduction (Tool)
• set_transmission_reduction_fun (Tool)
• susceptibility_reduction (Tool)
• set_incubation (Virus)
• set_incubation_fun (Virus)
• set_mutation (Virus)
• set_post_immunity (Virus)
• set_post_recovery (Virus)
• set_prob_death (Virus)
• set_prob_death_fun (Virus)
• set_prob_infecting (Virus)
• set_prob_infecting_fun (Virus)
• set_prob_recovery (Virus)
• set_prob_recovery_fun (Virus)
• state_removed (Virus)
• s (epi_xoshiro256ss)
• splitmix64 (epi_xoshiro256ss)

t

• tools (Agent, Model)
• today_tool (DataBase)
• today_total (DataBase)
• today_total_nviruses_active (DataBase)
• today_virus (DataBase)
• tool_id (DataBase)
• tool_name (DataBase, Tool)
• tool_origin_date (DataBase)
• tool_sequence (DataBase)
• transition_matrix (DataBase)
• transmission_date (DataBase)
• transmission_source (DataBase)
• transmission_source_exposure_date (DataBase)
• transmission_target (DataBase)
• transmission_virus (DataBase)
• tool (Event)
• time_elapsed (Model)
• time_end (Model)
• time_start (Model)
• today (Model)
• transmission_reduction_mixer (Model)
• tprob (ModelDiagram)
• transition_probability (ModelDiagram)
• Tool (Tool)
• transmission_reduction (Tool)
• ToolImmunoglobulin (ToolImmunoglobulin)
• ToolVaccine (ToolVaccine)

u

• update_state (DataBase, Model)
• update_tool (DataBase)
• update_virus (DataBase)
• user_data (DataBase)
• use_contact_tracing (Model)
• use_queuing (Model)
• using_backup (Model)
• update_exposed_seir (ModelSEIR, ModelSEIRD)
• update_infected_seir (ModelSEIR)
• update_infected (ModelSEIRCONN, ModelSEIRD, ModelSEIRDCONN, ModelSIRCONN)
• update_infected_list (ModelSEIRMixing, ModelSIRMixing)
• UserData (UserData)

v

• vcount (AdjList)
• virus (Agent, Event)
• virus_id (DataBase)
• virus_name (DataBase, Virus)
• virus_origin_date (DataBase)
• virus_parent_id (DataBase)
• virus_sequence (DataBase)
• verbose (LFMCMC, Model)
• verbose_off (LFMCMC, Model)
• verbose_on (LFMCMC, Model)
• viruses (Model)
• Virus (Virus)
• Viruses (Viruses)
• Viruses_const (Viruses_const)

w

• write_data (DataBase, Model)
• write_edgelist (Model)
• width (Progress)
• write (UserData)

~

• ~Agent (Agent)
• ~AgentsSample (AgentsSample)
• ~Entity (Entity)
• ~GlobalEvent (GlobalEvent)
• ~LFMCMC (LFMCMC)
• ~Model (Model)
• ~Progress (Progress)
• ~Tool (Tool)
• ~Virus (Virus)

_

• _date (HospitalizationsTracker)
• _tool_id (HospitalizationsTracker)
• _virus_id (HospitalizationsTracker)
• _weight (HospitalizationsTracker)
• _ig_efficacy (InterventionMeaslesPEP)
• _ig_half_life_mean (InterventionMeaslesPEP)
• _ig_half_life_sd (InterventionMeaslesPEP)
• _ig_willingness (InterventionMeaslesPEP)
• _mmr_efficacy (InterventionMeaslesPEP)
• _mmr_willingness (InterventionMeaslesPEP)
• _next_if_effective (InterventionMeaslesPEP)
• _next_if_ineffective (InterventionMeaslesPEP)
• _par_half_life_mean (InterventionMeaslesPEP, ToolImmunoglobulin)
• _par_half_life_sd (InterventionMeaslesPEP, ToolImmunoglobulin)
• _par_ig_efficacy (InterventionMeaslesPEP)
• _par_ig_willingness (InterventionMeaslesPEP)
• _par_mmr_efficacy (InterventionMeaslesPEP)
• _par_mmr_willingness (InterventionMeaslesPEP)
• _par_pep_ig_window (InterventionMeaslesPEP)
• _par_pep_mmr_window (InterventionMeaslesPEP)
• _pep_ig_window (InterventionMeaslesPEP)
• _pep_mmr_window (InterventionMeaslesPEP)
• _setup (InterventionMeaslesPEP, QuarantineTrigger)
• _states_if_pep_effective (InterventionMeaslesPEP)
• _states_if_pep_ineffective (InterventionMeaslesPEP)
• _target_states (InterventionMeaslesPEP)
• _to_receive_pep (InterventionMeaslesPEP)
• _willing_to_receive_ig (InterventionMeaslesPEP)
• _willing_to_receive_mmr (InterventionMeaslesPEP)
• _add_event (Model)
• _event_add_entity (Model)
• _event_add_tool (Model)
• _event_add_virus (Model)
• _event_change_state (Model)
• _event_rm_entity (Model)
• _event_rm_tool (Model)
• _event_rm_virus (Model)
• _quarantine_process (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine)
• _update_hospitalized (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine)
• _update_infectious_list (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine)
• _update_isolated (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine)
• _update_isolated_recovered (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine)
• _update_latent (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool)
• _update_prodromal (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool)
• _update_quarantine_latent (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine)
• _update_quarantine_prodromal (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine)
• _update_quarantine_recovered (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine)
• _update_quarantine_suscep (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine)
• _update_rash (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool)
• _update_susceptible (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine)
• _quarantine_agents (ModelMeaslesSchool)
• _update_infectious (ModelMeaslesSchool)
• _update_q_latent (ModelMeaslesSchool)
• _update_q_prodromal (ModelMeaslesSchool)
• _update_q_recovered (ModelMeaslesSchool)
• _update_q_susceptible (ModelMeaslesSchool)
• _sample_agents (ModelSEIRMixingQuarantine)
• _update_exposed (ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine)
• _update_infected (ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine)
• _update_infected_list (ModelSEIRMixingQuarantine)
• _update_quarantine_exposed (ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine)
• _agents_triggering_quarantine (QuarantineTrigger)
• _date_infectious (QuarantineTrigger)
• _day (QuarantineTrigger)
• _model_sim_id (QuarantineTrigger)
• _error_method (ToolImmunoglobulin)
• _immune (ToolImmunoglobulin, ToolVaccine)
• _par_efficacy (ToolImmunoglobulin)
• _removal_time (ToolImmunoglobulin)
• _remove_tool (ToolImmunoglobulin)
• _set_immunity (ToolImmunoglobulin, ToolVaccine)
• _efficacy (ToolVaccine)