Class Members

a

• AdjList (AdjList, epiworld::AdjList)
• Agent (Agent, epimodels::Agent, epiworld::Agent)
• add_entity (Agent, Model, epimodels::Agent, epimodels::Model, epiworld::Agent, epiworld::Model)
• add_neighbor (Agent, epimodels::Agent, epiworld::Agent)
• add_tool (Agent, Model, epimodels::Agent, epimodels::Model, epiworld::Agent, epiworld::Model)
• append_neighbor (Agent, epimodels::Agent, epiworld::Agent)
• AgentIdsView (AgentIdsView, epimodels::AgentIdsView, epiworld::AgentIdsView)
• AgentsSample (AgentsSample, epiworld::AgentsSample)
• agent (AgentsSample, Event, NeighborsView, Tool, Virus, epimodels::Event, epimodels::NeighborsView, epimodels::Tool, epimodels::Virus, epiworld::AgentsSample, epiworld::Event, epiworld::NeighborsView, epiworld::Tool, epiworld::Virus)
• agents (AgentsSample, Entity, epiworld::AgentsSample, epiworld::Entity)
• agents_left (AgentsSample, epiworld::AgentsSample)
• agents_left_n (AgentsSample, epiworld::AgentsSample)
• agents_n (AgentsSample, epiworld::AgentsSample)
• add_contact (ContactTracing, epimodels::ContactTracing, epiworld::ContactTracing)
• add_user_data (DataBase, Model, epimodels::DataBase, epimodels::Model, epiworld::DataBase, epiworld::Model)
• add_agent (Entity, epiworld::Entity)
• action (Event, epimodels::Event, epiworld::Event)
• agent_recovers (InterventionMeaslesPEP, measles::InterventionMeaslesPEP)
• add_edge (Model, epimodels::Model, epiworld::Model)
• add_globalevent (Model, epimodels::Model, epiworld::Model)
• add_param (Model, epimodels::Model, epiworld::Model)
• add_state (Model, epimodels::Model, epiworld::Model)
• add_virus (Model, epimodels::Model, epiworld::Model)
• agent_carrier (Model, epimodels::Model, epiworld::Model)
• agent_state (Model, epimodels::Model, epiworld::Model)
• agents_bernoulli (Model, epimodels::Model, epiworld::Model)
• agents_data (Model, epimodels::Model, epiworld::Model)
• agents_data_ncols (Model, epimodels::Model, epiworld::Model)
• agents_empty_graph (Model, epimodels::Model, epiworld::Model)
• agents_from_adjlist (Model, epimodels::Model, epiworld::Model)
• agents_from_edgelist (Model, epimodels::Model, epiworld::Model)
• agents_sbm (Model, epimodels::Model, epiworld::Model)
• agents_set_neighbors (Model, epimodels::Model, epiworld::Model)
• agents_smallworld (Model, epimodels::Model, epiworld::Model)
• array_double_tmp (Model, epimodels::Model, epiworld::Model)
• array_virus_tmp (Model, epimodels::Model, epiworld::Model)
• ADOPTER (ModelDiffNet, epimodels::ModelDiffNet, epiworld::epimodels::ModelDiffNet)
• agent_quarantine_triggered (ModelMeaslesMixing, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine, epimodels::ModelSEIRMixingQuarantine, epimodels::ModelSEIRNetworkQuarantine, epiworld::epimodels::ModelSEIRMixingQuarantine, epiworld::epimodels::ModelSEIRNetworkQuarantine, measles::ModelMeaslesMixing)
• adjusted_contact_rate (ModelMeaslesMixingRiskQuarantine, SamplerMixing, measles::ModelMeaslesMixingRiskQuarantine, measles::SamplerMixing)
• agents_checked_contact_tracing (ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesMixingRiskQuarantine)
• agents_triggered_contact_tracing (ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesMixingRiskQuarantine)
• agents_triggered_contact_tracing_size (ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesMixingRiskQuarantine)
• ASYMPTOMATIC (ModelSURV, epimodels::ModelSURV, epiworld::epimodels::ModelSURV)
• ASYMPTOMATIC_ISOLATED (ModelSURV, epimodels::ModelSURV, epiworld::epimodels::ModelSURV)
• add (OutputTable, UserData, epiworld::OutputTable, epiworld::UserData)
• add_triggering_agent (QuarantineTrigger, epiworld::QuarantineTrigger)
• active (Queue, epimodels::Queue, epiworld::Queue)
• AGENT (SAMPLETYPE, epiworld::SAMPLETYPE)
• add_target (Tool, epimodels::Tool, epiworld::Tool)
• add_choice (cli::Parser)
• add_double (cli::Parser)
• add_int (cli::Parser)
• add_list (cli::Parser)
• add_long (cli::Parser)
• add_onoff (cli::Parser)
• add_size_list (cli::Parser)
• available_states (epiworld::sampler::Mixing, sampler::Mixing)

b

• build_neighbor_index (Agent, epimodels::Agent, epiworld::Agent)
• begin (AgentIdsView, AgentsSample, Entity, NeighborsView, SampledContactsView, Viruses, Viruses_const, epimodels::AgentIdsView, epimodels::NeighborsView, epimodels::SampledContactsView, epimodels::Viruses, epimodels::Viruses_const, epiworld::AgentIdsView, epiworld::AgentsSample, epiworld::Entity, epiworld::NeighborsView, epiworld::SampledContactsView, epiworld::Viruses, epiworld::Viruses_const)
• BubbleTool (BubbleTool, epiworld::BubbleTool)
• Bubbles (Bubbles, epiworld::Bubbles)
• bubble_id (Bubbles, epiworld::Bubbles)
• build_ties (Bubbles, epiworld::Bubbles)
• bits (Queue, epimodels::Queue, epiworld::Queue)

c

• change_state (Agent, epimodels::Agent, epiworld::Agent)
• clone_ptr (BubbleTool, Bubbles, GlobalEvent, InterventionMeaslesPEP, Model, ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool, ModelSEIRCONN, ModelSEIRDCONN, ModelSEIRMixing, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine, ModelSIRCONN, ModelSIRDCONN, ModelSIRLogit, ModelSIRMixing, Tool, ToolImmunoglobulin, ToolVaccine, Virus, epimodels::GlobalEvent, epimodels::Model, epimodels::ModelSEIRCONN, epimodels::ModelSEIRDCONN, epimodels::ModelSEIRMixing, epimodels::ModelSEIRMixingQuarantine, epimodels::ModelSEIRNetworkQuarantine, epimodels::ModelSIRCONN, epimodels::ModelSIRDCONN, epimodels::ModelSIRLogit, epimodels::ModelSIRMixing, epimodels::Tool, epimodels::Virus, epiworld::BubbleTool, epiworld::Bubbles, epiworld::GlobalEvent, epiworld::Model, epiworld::Tool, epiworld::ToolVaccine, epiworld::Virus, epiworld::epimodels::ModelSEIRCONN, epiworld::epimodels::ModelSEIRDCONN, epiworld::epimodels::ModelSEIRMixing, epiworld::epimodels::ModelSEIRMixingQuarantine, epiworld::epimodels::ModelSEIRNetworkQuarantine, epiworld::epimodels::ModelSIRCONN, epiworld::epimodels::ModelSIRDCONN, epiworld::epimodels::ModelSIRLogit, epiworld::epimodels::ModelSIRMixing, measles::InterventionMeaslesPEP, measles::ModelMeaslesMixing, measles::ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesSchool, measles::ToolImmunoglobulin)
• compute_partition (Bubbles, epiworld::Bubbles)
• created_ties (Bubbles, epiworld::Bubbles)
• contains (Bubbles::HeldTies, epiworld::Bubbles::HeldTies)
• ContactMatrix (ContactMatrix, epimodels::ContactMatrix, epiworld::ContactMatrix)
• contact_matrix (ContactMatrix, ContactTracing, epimodels::ContactMatrix, epimodels::ContactTracing, epiworld::ContactMatrix, epiworld::ContactTracing)
• contact_matrix_backup (ContactMatrix, epimodels::ContactMatrix, epiworld::ContactMatrix)
• ContactRecord (ContactRecord, epimodels::ContactRecord, epiworld::ContactRecord)
• ContactTracing (ContactTracing, epimodels::ContactTracing, epiworld::ContactTracing)
• cached_contacts (ContactTracing, epimodels::ContactTracing, epiworld::ContactTracing)
• contact_date (ContactTracing, epimodels::ContactTracing, epiworld::ContactTracing)
• contacts_per_agent (ContactTracing, epimodels::ContactTracing, epiworld::ContactTracing)
• check (EpiAssert, epiworld::EpiAssert)
• check_bounds (EpiAssert, epiworld::EpiAssert)
• check_non_negative (EpiAssert, epiworld::EpiAssert)
• check_probability (EpiAssert, epiworld::EpiAssert)
• check_size (EpiAssert, epiworld::EpiAssert)
• check_sum (EpiAssert, epiworld::EpiAssert)
• chrono_end (LFMCMC, Model, epimodels::Model, epiworld::LFMCMC, epiworld::Model)
• chrono_start (LFMCMC, Model, epimodels::Model, epiworld::LFMCMC, epiworld::Model)
• check_stage_sds (MeaslesStages, measles::MeaslesStages)
• candidate (Model::PushTarget, epimodels::Model::PushTarget, epiworld::Model::PushTarget)
• carrier_degree (Model::TransmissionSums, epimodels::Model::TransmissionSums, epiworld::Model::TransmissionSums)
• carriers (Model::TransmissionSums, epimodels::Model::TransmissionSums, epiworld::Model::TransmissionSums)
• check_edge_endpoints (Model, epimodels::Model, epiworld::Model)
• clear_post_sampling (Model, epimodels::Model, epiworld::Model)
• clear_state_set (Model, epimodels::Model, epiworld::Model)
• contact_tracing (Model, epimodels::Model, epiworld::Model)
• contact_tracing_max_contacts (Model, epimodels::Model, epiworld::Model)
• contact_tracing_off (Model, epimodels::Model, epiworld::Model)
• contact_tracing_on (Model, epimodels::Model, epiworld::Model)
• current_date (Model, epimodels::Model, epiworld::Model)
• clear (ModelDiagram, PostSamplingScratch, SaverMemory, epimodels::PostSamplingScratch, epiworld::ModelDiagram, epiworld::PostSamplingScratch, epiworld::SaverMemory)
• coef_infect_cols (ModelSIRLogit, epimodels::ModelSIRLogit, epiworld::epimodels::ModelSIRLogit)
• coef_recover_cols (ModelSIRLogit, epimodels::ModelSIRLogit, epiworld::epimodels::ModelSIRLogit)
• coefs_infect (ModelSIRLogit, epimodels::ModelSIRLogit, epiworld::epimodels::ModelSIRLogit)
• coefs_recover (ModelSIRLogit, epimodels::ModelSIRLogit, epiworld::epimodels::ModelSIRLogit)
• Column (OutputTable, epiworld::OutputTable)
• colnames (OutputTable, epiworld::OutputTable)
• columns (OutputTable, epiworld::OutputTable)
• cache (ParamRef, epiworld::ParamRef)
• counts (PostSamplingScratch, epimodels::PostSamplingScratch, epiworld::PostSamplingScratch, epiworld::sampler::Mixing, sampler::Mixing)
• cur_loc (Progress, epiworld::Progress)
• configure (SamplerMixing, measles::SamplerMixing)
• contact_states (SamplerMixing, measles::SamplerMixing)
• clear_targets (Tool, epimodels::Tool, epiworld::Tool)
• checksum (bench::Timing)

d

• dat (AdjList, Viruses, Viruses_const, epimodels::Viruses, epimodels::Viruses_const, epiworld::AdjList, epiworld::Viruses, epiworld::Viruses_const)
• directed (AdjList, Model, epimodels::Model, epiworld::AdjList, epiworld::Model)
• DataBase (DataBase, epimodels::DataBase, epiworld::DataBase)
• dist_fun (Entity, epiworld::Entity)
• distribute (Entity, Tool, Virus, epimodels::Tool, epimodels::Virus, epiworld::Entity, epiworld::Tool, epiworld::Virus)
• day (GlobalEvent, epimodels::GlobalEvent, epiworld::GlobalEvent)
• draw_days (MeaslesStages, measles::MeaslesStages)
• db (Model, epimodels::Model, epiworld::Model)
• death_reduction_mixer (Model, epimodels::Model, epiworld::Model)
• dist_entities (Model, epimodels::Model, epiworld::Model)
• dist_tools (Model, epimodels::Model, epiworld::Model)
• dist_virus (Model, epimodels::Model, epiworld::Model)
• draw (Model, ModelDiagram, epimodels::Model, epiworld::Model, epiworld::ModelDiagram)
• data (ModelDiagram, epiworld::ModelDiagram)
• draw_dot (ModelDiagram, epiworld::ModelDiagram)
• draw_from_data (ModelDiagram, epiworld::ModelDiagram)
• draw_from_file (ModelDiagram, epiworld::ModelDiagram)
• draw_from_files (ModelDiagram, epiworld::ModelDiagram)
• draw_mermaid (ModelDiagram, epiworld::ModelDiagram)
• data_cols (ModelDiffNet, epimodels::ModelDiffNet, epiworld::epimodels::ModelDiffNet)
• day_flagged (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine, epimodels::ModelSEIRMixingQuarantine, epimodels::ModelSEIRNetworkQuarantine, epiworld::epimodels::ModelSEIRMixingQuarantine, epiworld::epimodels::ModelSEIRNetworkQuarantine, measles::ModelMeaslesMixing, measles::ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesSchool)
• day_latent (ModelMeaslesMixing, measles::ModelMeaslesMixing)
• day_rash_onset (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool, measles::ModelMeaslesMixing, measles::ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesSchool)
• days_quarantine_triggered (ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesMixingRiskQuarantine)
• DECEASED (ModelSEIRD, ModelSEIRDCONN, ModelSIRDCONN, epimodels::ModelSEIRD, epimodels::ModelSEIRDCONN, epimodels::ModelSIRDCONN, epiworld::epimodels::ModelSEIRD, epiworld::epimodels::ModelSEIRDCONN, epiworld::epimodels::ModelSIRDCONN)
• day_exposed (ModelSEIRMixingQuarantine, epimodels::ModelSEIRMixingQuarantine, epiworld::epimodels::ModelSEIRMixingQuarantine)
• day_onset (ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine, epimodels::ModelSEIRMixingQuarantine, epimodels::ModelSEIRNetworkQuarantine, epiworld::epimodels::ModelSEIRMixingQuarantine, epiworld::epimodels::ModelSEIRNetworkQuarantine)
• DETECTED_HOSPITALIZED (ModelSEIRNetworkQuarantine, epimodels::ModelSEIRNetworkQuarantine, epiworld::epimodels::ModelSEIRNetworkQuarantine)
• days_latent_and_infectious (ModelSURV, epimodels::ModelSURV, epiworld::epimodels::ModelSURV)
• date (Tool, Virus, epimodels::Tool, epimodels::Virus, epiworld::Tool, epiworld::Virus)
• death_reduction (Tool, epimodels::Tool, epiworld::Tool)
• dist (Tool, Virus, epimodels::Tool, epimodels::Virus, epiworld::Tool, epiworld::Virus)
• data_data (UserData, epiworld::UserData)
• data_dates (UserData, epiworld::UserData)
• data_names (UserData, epiworld::UserData)
• description (cli::Parser)
• def (cli::Parser::Option)

e

• E (AdjList, epiworld::AdjList)
• ecount (AdjList, epiworld::AdjList)
• entities (Agent, Model, epimodels::Agent, epimodels::Model, epiworld::Agent, epiworld::Model)
• erase_neighbor_at (Agent, epimodels::Agent, epiworld::Agent)
• empty (AgentIdsView, NeighborsView, SampledContactsView, epimodels::AgentIdsView, epimodels::NeighborsView, epimodels::SampledContactsView, epiworld::AgentIdsView, epiworld::NeighborsView, epiworld::SampledContactsView)
• end (AgentIdsView, AgentsSample, Entity, NeighborsView, SampledContactsView, Viruses, Viruses_const, epimodels::AgentIdsView, epimodels::NeighborsView, epimodels::SampledContactsView, epimodels::Viruses, epimodels::Viruses_const, epiworld::AgentIdsView, epiworld::AgentsSample, epiworld::Entity, epiworld::NeighborsView, epiworld::SampledContactsView, epiworld::Viruses, epiworld::Viruses_const)
• entity (AgentsSample, Event, epimodels::Event, epiworld::AgentsSample, epiworld::Event)
• end_day (Bubbles, epiworld::Bubbles)
• Entity (Entity, epiworld::Entity)
• entity_name (Entity, epiworld::Entity)
• Event (Event, epimodels::Event, epiworld::Event)
• engine (Model, epimodels::Model, epiworld::Model)
• events (Model, epimodels::Model, epiworld::Model)
• events_run (Model, epimodels::Model, epiworld::Model)
• EXPOSED (ModelSEIR, ModelSEIRCONN, ModelSEIRD, ModelSEIRDCONN, ModelSEIRMixing, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine, epimodels::ModelSEIR, epimodels::ModelSEIRCONN, epimodels::ModelSEIRD, epimodels::ModelSEIRDCONN, epimodels::ModelSEIRMixing, epimodels::ModelSEIRMixingQuarantine, epimodels::ModelSEIRNetworkQuarantine, epiworld::epimodels::ModelSEIR, epiworld::epimodels::ModelSEIRCONN, epiworld::epimodels::ModelSEIRD, epiworld::epimodels::ModelSEIRDCONN, epiworld::epimodels::ModelSEIRMixing, epiworld::epimodels::ModelSEIRMixingQuarantine, epiworld::epimodels::ModelSEIRNetworkQuarantine)
• Everyone (Queue, epimodels::Queue, epiworld::Queue)
• everyone (Queue, epimodels::Queue, epiworld::Queue)
• ENTITY (SAMPLETYPE, epiworld::SAMPLETYPE)
• entity_indices (SamplerMixing, measles::SamplerMixing)
• EPI_TYPENAME_TRAITS (Tool, Virus, epimodels::Tool, epimodels::Virus, epiworld::Tool, epiworld::Virus)
• epi_xoshiro256ss (epi_xoshiro256ss, epiworld::epi_xoshiro256ss)
• exclude (epiworld::sampler::UpdateSusceptible, sampler::UpdateSusceptible)
• exclude_agent_bool (epiworld::sampler::UpdateSusceptible, sampler::UpdateSusceptible)

f

• find_neighbor (Agent, epimodels::Agent, epiworld::Agent)
• first (AgentIdsView, NeighborsView, SampledContactsView, epimodels::AgentIdsView, epimodels::NeighborsView, epimodels::SampledContactsView, epiworld::AgentIdsView, epiworld::NeighborsView, epiworld::SampledContactsView)
• flavor (Bubbles, epiworld::Bubbles)
• focus (Bubbles::HeldTies, epiworld::Bubbles::HeldTies)
• focused (Bubbles::HeldTies, epiworld::Bubbles::HeldTies)
• fmt_location (EpiAssert, epiworld::EpiAssert)
• fun (GlobalEvent, epimodels::GlobalEvent, epiworld::GlobalEvent)
• for_each_nonzero (Queue, epimodels::Queue, epiworld::Queue)
• final_size (bench::Timing)

g

• get_dat (AdjList, epiworld::AdjList)
• get_death_reduction (Agent, Tool, epimodels::Agent, epimodels::Tool, epiworld::Agent, epiworld::Tool)
• get_entities (Agent, Model, epimodels::Agent, epimodels::Model, epiworld::Agent, epiworld::Model)
• get_entity (Agent, Model, epimodels::Agent, epimodels::Model, epiworld::Agent, epiworld::Model)
• get_id (Agent, Entity, Tool, Virus, epimodels::Agent, epimodels::Tool, epimodels::Virus, epiworld::Agent, epiworld::Entity, epiworld::Tool, epiworld::Virus)
• get_n_entities (Agent, Model, epimodels::Agent, epimodels::Model, epiworld::Agent, epiworld::Model)
• get_n_neighbors (Agent, epimodels::Agent, epiworld::Agent)
• get_n_tools (Agent, DataBase, Model, epimodels::Agent, epimodels::DataBase, epimodels::Model, epiworld::Agent, epiworld::DataBase, epiworld::Model)
• get_neighbors (Agent, epimodels::Agent, epiworld::Agent)
• get_recovery_enhancer (Agent, Tool, epimodels::Agent, epimodels::Tool, epiworld::Agent, epiworld::Tool)
• get_state (Agent, Entity, Tool, Virus, epimodels::Agent, epimodels::Tool, epimodels::Virus, epiworld::Agent, epiworld::Entity, epiworld::Tool, epiworld::Virus)
• get_state_last_changed (Agent, epimodels::Agent, epiworld::Agent)
• get_state_prev (Agent, epimodels::Agent, epiworld::Agent)
• get_susceptibility_reduction (Agent, BubbleTool, Tool, ToolImmunoglobulin, ToolVaccine, epimodels::Agent, epimodels::Tool, epiworld::Agent, epiworld::BubbleTool, epiworld::Tool, epiworld::ToolVaccine, measles::ToolImmunoglobulin)
• get_tool (Agent, Model, epimodels::Agent, epimodels::Model, epiworld::Agent, epiworld::Model)
• get_tools (Agent, Model, epimodels::Agent, epimodels::Model, epiworld::Agent, epiworld::Model)
• get_transmission_reduction (Agent, Tool, epimodels::Agent, epimodels::Tool, epiworld::Agent, epiworld::Tool)
• get_virus (Agent, Model, epimodels::Agent, epimodels::Model, epiworld::Agent, epiworld::Model)
• get_bubble_id (Bubbles, epiworld::Bubbles)
• get_created_ties (Bubbles, epiworld::Bubbles)
• get_flavor (Bubbles, epiworld::Bubbles)
• get_from (Bubbles, epiworld::Bubbles)
• get_last_epoch (Bubbles, epiworld::Bubbles)
• get_param_name (Bubbles, epiworld::Bubbles)
• get_ties (Bubbles, epiworld::Bubbles)
• group_size (Bubbles, epiworld::Bubbles)
• get_contact_matrix (ContactMatrix, epimodels::ContactMatrix, epiworld::ContactMatrix)
• get_contact_matrix_ref (ContactMatrix, epimodels::ContactMatrix, epiworld::ContactMatrix)
• get_contact_matrix_size (ContactMatrix, epimodels::ContactMatrix, epiworld::ContactMatrix)
• get_contact_rate (ContactMatrix, epimodels::ContactMatrix, epiworld::ContactMatrix)
• get_contact_id (ContactRecord, epimodels::ContactRecord, epiworld::ContactRecord)
• get_times (ContactRecord, epimodels::ContactRecord, epiworld::ContactRecord)
• get_contact (ContactTracing, epimodels::ContactTracing, epiworld::ContactTracing)
• get_contacts (ContactTracing, epimodels::ContactTracing, epiworld::ContactTracing)
• get_location (ContactTracing, Entity, epimodels::ContactTracing, epiworld::ContactTracing, epiworld::Entity)
• get_max_contacts (ContactTracing, epimodels::ContactTracing, epiworld::ContactTracing)
• get_n_contacts (ContactTracing, epimodels::ContactTracing, epiworld::ContactTracing)
• get_active_cases (DataBase, epimodels::DataBase, epiworld::DataBase)
• get_generation_time (DataBase, epimodels::DataBase, epiworld::DataBase)
• get_hist_tool (DataBase, epimodels::DataBase, epiworld::DataBase)
• get_hist_total (DataBase, epimodels::DataBase, epiworld::DataBase)
• get_hist_transition_matrix (DataBase, epimodels::DataBase, epiworld::DataBase)
• get_hist_virus (DataBase, epimodels::DataBase, epiworld::DataBase)
• get_hospitalizations (DataBase, Model, epimodels::DataBase, epimodels::Model, epiworld::DataBase, epiworld::Model)
• get_model (DataBase, epimodels::DataBase, epiworld::DataBase)
• get_n_viruses (DataBase, Model, epimodels::DataBase, epimodels::Model, epiworld::DataBase, epiworld::Model)
• get_nexposed (DataBase, epimodels::DataBase, epiworld::DataBase)
• get_outbreak_size (DataBase, epimodels::DataBase, epiworld::DataBase)
• get_reproductive_number (DataBase, epimodels::DataBase, epiworld::DataBase)
• get_run_outputs (DataBase, epimodels::DataBase, epiworld::DataBase)
• get_sequence (DataBase, epimodels::DataBase, epiworld::DataBase)
• get_today_total (DataBase, epimodels::DataBase, epiworld::DataBase)
• get_today_transition_matrix (DataBase, epimodels::DataBase, epiworld::DataBase)
• get_today_virus (DataBase, epimodels::DataBase, epiworld::DataBase)
• get_transition_probability (DataBase, epimodels::DataBase, epiworld::DataBase)
• get_transmissions (DataBase, epimodels::DataBase, epiworld::DataBase)
• get_user_data (DataBase, Model, epimodels::DataBase, epimodels::Model, epiworld::DataBase, epiworld::Model)
• get_agents (Entity, Model, epimodels::Model, epiworld::Entity, epiworld::Model)
• get_agents_ids (Entity, epiworld::Entity)
• get_name (Entity, GlobalEvent, Model, Tool, Virus, epimodels::GlobalEvent, epimodels::Model, epimodels::Tool, epimodels::Virus, epiworld::Entity, epiworld::GlobalEvent, epiworld::Model, epiworld::Tool, epiworld::Virus)
• get_queue (Entity, Model, Tool, Virus, epimodels::Model, epimodels::Tool, epimodels::Virus, epiworld::Entity, epiworld::Model, epiworld::Tool, epiworld::Virus)
• GlobalEvent (GlobalEvent, epimodels::GlobalEvent, epiworld::GlobalEvent)
• get_day (GlobalEvent, epimodels::GlobalEvent, epiworld::GlobalEvent)
• get (HospitalizationsTracker, epiworld::HospitalizationsTracker)
• get_all_accepted_kernel_scores (LFMCMC, epiworld::LFMCMC)
• get_all_accepted_params (LFMCMC, epiworld::LFMCMC)
• get_all_accepted_stats (LFMCMC, epiworld::LFMCMC)
• get_all_sample_acceptance (LFMCMC, epiworld::LFMCMC)
• get_all_sample_drawn_prob (LFMCMC, epiworld::LFMCMC)
• get_all_sample_kernel_scores (LFMCMC, epiworld::LFMCMC)
• get_all_sample_params (LFMCMC, epiworld::LFMCMC)
• get_all_sample_stats (LFMCMC, epiworld::LFMCMC)
• get_current_accepted_params (LFMCMC, epiworld::LFMCMC)
• get_current_accepted_stats (LFMCMC, epiworld::LFMCMC)
• get_current_proposed_params (LFMCMC, epiworld::LFMCMC)
• get_current_proposed_stats (LFMCMC, epiworld::LFMCMC)
• get_elapsed_time (LFMCMC, epiworld::LFMCMC)
• get_epsilon (LFMCMC, epiworld::LFMCMC)
• get_initial_params (LFMCMC, epiworld::LFMCMC)
• get_mean_params (LFMCMC, epiworld::LFMCMC)
• get_mean_stats (LFMCMC, epiworld::LFMCMC)
• get_n_params (LFMCMC, Model, epimodels::Model, epiworld::LFMCMC, epiworld::Model)
• get_n_samples (LFMCMC, epiworld::LFMCMC)
• get_n_stats (LFMCMC, epiworld::LFMCMC)
• get_observed_stats (LFMCMC, epiworld::LFMCMC)
• get_rand_endgine (LFMCMC, Model, epimodels::Model, epiworld::LFMCMC, epiworld::Model)
• get_simulated_data (LFMCMC, epiworld::LFMCMC)
• get_agent (Model, Tool, Virus, epimodels::Model, epimodels::Tool, epimodels::Virus, epiworld::Model, epiworld::Tool, epiworld::Virus)
• get_agent_carrier (Model, epimodels::Model, epiworld::Model)
• get_agents_data (Model, epimodels::Model, epiworld::Model)
• get_agents_data_ncols (Model, epimodels::Model, epiworld::Model)
• get_agents_in_state (Model, epimodels::Model, epiworld::Model)
• get_agents_states (Model, epimodels::Model, epiworld::Model)
• get_agents_viruses (Model, epimodels::Model, epiworld::Model)
• get_contact_tracing (Model, epimodels::Model, epiworld::Model)
• get_db (Model, epimodels::Model, epiworld::Model)
• get_elapsed (Model, epimodels::Model, epiworld::Model)
• get_globalevent (Model, epimodels::Model, epiworld::Model)
• get_last_transmission_mode (Model, epimodels::Model, epiworld::Model)
• get_n_globalevents (Model, epimodels::Model, epiworld::Model)
• get_n_replicates (Model, epimodels::Model, epiworld::Model)
• get_n_states (Model, epimodels::Model, epiworld::Model)
• get_ndays (Model, epimodels::Model, epiworld::Model)
• get_param (Model, epimodels::Model, epiworld::Model)
• get_param_id (Model, epimodels::Model, epiworld::Model)
• get_param_layout_id (Model, epimodels::Model, epiworld::Model)
• get_rewire_prop (Model, epimodels::Model, epiworld::Model)
• get_sim_id (Model, epimodels::Model, epiworld::Model)
• get_state_fun (Model, epimodels::Model, epiworld::Model)
• get_states (Model, epimodels::Model, epiworld::Model)
• get_transmission_kappa (Model, epimodels::Model, epiworld::Model)
• get_transmission_mode (Model, epimodels::Model, epiworld::Model)
• get_transmission_sums (Model, epimodels::Model, epiworld::Model)
• get_verbose (Model, epimodels::Model, epiworld::Model)
• get_viruses (Model, epimodels::Model, epiworld::Model)
• globalevents (Model, epimodels::Model, epiworld::Model)
• get_agent_quarantine_triggered (ModelMeaslesMixing, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine, epimodels::ModelSEIRMixingQuarantine, epimodels::ModelSEIRNetworkQuarantine, epiworld::epimodels::ModelSEIRMixingQuarantine, epiworld::epimodels::ModelSEIRNetworkQuarantine, measles::ModelMeaslesMixing)
• get_isolation_willingness (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine, epimodels::ModelSEIRMixingQuarantine, epimodels::ModelSEIRNetworkQuarantine, epiworld::epimodels::ModelSEIRMixingQuarantine, epiworld::epimodels::ModelSEIRNetworkQuarantine, measles::ModelMeaslesMixing, measles::ModelMeaslesMixingRiskQuarantine)
• get_quarantine_willingness (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine, epimodels::ModelSEIRMixingQuarantine, epimodels::ModelSEIRNetworkQuarantine, epiworld::epimodels::ModelSEIRMixingQuarantine, epiworld::epimodels::ModelSEIRNetworkQuarantine, measles::ModelMeaslesMixing, measles::ModelMeaslesMixingRiskQuarantine)
• get_days_quarantine_triggered (ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesMixingRiskQuarantine)
• get_quarantine_risk_level (ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesMixingRiskQuarantine)
• generation_time_expected (ModelSEIRCONN, ModelSIRCONN, epimodels::ModelSEIRCONN, epimodels::ModelSIRCONN, epiworld::epimodels::ModelSEIRCONN, epiworld::epimodels::ModelSIRCONN)
• get_n_infected (ModelSEIRCONN, ModelSEIRDCONN, ModelSIRCONN, ModelSIRMixing, epimodels::ModelSEIRCONN, epimodels::ModelSEIRDCONN, epimodels::ModelSIRCONN, epimodels::ModelSIRMixing, epiworld::epimodels::ModelSEIRCONN, epiworld::epimodels::ModelSEIRDCONN, epiworld::epimodels::ModelSIRCONN, epiworld::epimodels::ModelSIRMixing)
• grouped (PostSamplingScratch, epimodels::PostSamplingScratch, epiworld::PostSamplingScratch)
• get_date_infectious (QuarantineTrigger, epiworld::QuarantineTrigger)
• get_triggering_agents (QuarantineTrigger, epiworld::QuarantineTrigger)
• get_reduced_contact_rate (SamplerMixing, measles::SamplerMixing)
• get_sampled_agents (SamplerMixing, measles::SamplerMixing)
• get_date (Tool, Virus, epimodels::Tool, epimodels::Virus, epiworld::Tool, epiworld::Virus)
• get_targets (Tool, epimodels::Tool, epiworld::Tool)
• get_all (UserData, epiworld::UserData)
• get_data (UserData, epiworld::UserData)
• get_dates (UserData, epiworld::UserData)
• get_names (UserData, epiworld::UserData)
• get_incubation (Virus, epimodels::Virus, epiworld::Virus)
• get_lineage_id (Virus, epimodels::Virus, epiworld::Virus)
• get_prob_death (Virus, epimodels::Virus, epiworld::Virus)
• get_prob_infecting (Virus, epimodels::Virus, epiworld::Virus)
• get_prob_recovery (Virus, epimodels::Virus, epiworld::Virus)
• get_n_infectious (epiworld::sampler::Mixing, sampler::Mixing)

h

• has_entity (Agent, epimodels::Agent, epiworld::Agent)
• has_neighbor (Agent, epimodels::Agent, epiworld::Agent)
• has_tool (Agent, Model, epimodels::Agent, epimodels::Model, epiworld::Agent, epiworld::Model)
• has_virus (Agent, Model, epimodels::Agent, epimodels::Model, epiworld::Agent, epiworld::Model)
• heir_of (Bubbles, epiworld::Bubbles)
• household_id (Bubbles, epiworld::Bubbles)
• HeldTies (Bubbles::HeldTies, epiworld::Bubbles::HeldTies)
• hist_tool_counts (DataBase, epimodels::DataBase, epiworld::DataBase)
• hist_tool_date (DataBase, epimodels::DataBase, epiworld::DataBase)
• hist_tool_id (DataBase, epimodels::DataBase, epiworld::DataBase)
• hist_tool_state (DataBase, epimodels::DataBase, epiworld::DataBase)
• hist_total_counts (DataBase, epimodels::DataBase, epiworld::DataBase)
• hist_total_date (DataBase, epimodels::DataBase, epiworld::DataBase)
• hist_total_nviruses_active (DataBase, epimodels::DataBase, epiworld::DataBase)
• hist_total_state (DataBase, epimodels::DataBase, epiworld::DataBase)
• hist_transition_matrix (DataBase, epimodels::DataBase, epiworld::DataBase)
• hist_virus_counts (DataBase, epimodels::DataBase, epiworld::DataBase)
• hist_virus_date (DataBase, epimodels::DataBase, epiworld::DataBase)
• hist_virus_id (DataBase, epimodels::DataBase, epiworld::DataBase)
• hist_virus_state (DataBase, epimodels::DataBase, epiworld::DataBase)
• HospitalizationsTracker (HospitalizationsTracker, epiworld::HospitalizationsTracker)
• has_edge (Model, epimodels::Model, epiworld::Model)
• has_globalevent (Model, epimodels::Model, epiworld::Model)
• has_param (Model, epimodels::Model, epiworld::Model)
• has_post_sampling (Model, epimodels::Model, epiworld::Model)
• has_rewire_fun (Model, epimodels::Model, epiworld::Model)
• HOSPITALIZED (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine, epimodels::ModelSEIRMixingQuarantine, epimodels::ModelSEIRNetworkQuarantine, epiworld::epimodels::ModelSEIRMixingQuarantine, epiworld::epimodels::ModelSEIRNetworkQuarantine, measles::ModelMeaslesMixing, measles::ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesSchool)
• has_pep (ModelMeaslesSchool, measles::ModelMeaslesSchool)
• help (cli::Parser::Option)

i

• is_directed (AdjList, Model, epimodels::Model, epiworld::AdjList, epiworld::Model)
• id (Agent, Entity, Model::PushTarget, NeighborsView, ParamRef, Tool, Virus, epimodels::Agent, epimodels::Model::PushTarget, epimodels::NeighborsView, epimodels::Tool, epimodels::Virus, epiworld::Agent, epiworld::Entity, epiworld::Model::PushTarget, epiworld::NeighborsView, epiworld::ParamRef, epiworld::Tool, epiworld::Virus)
• is_active (Bubbles, epiworld::Bubbles)
• InterventionMeaslesPEP (InterventionMeaslesPEP, measles::InterventionMeaslesPEP)
• initial_states (Model, ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelSEIR, ModelSEIRCONN, ModelSEIRD, ModelSEIRDCONN, ModelSEIRMixing, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine, ModelSIR, ModelSIRCONN, ModelSIRD, ModelSIRMixing, epimodels::Model, epimodels::ModelSEIR, epimodels::ModelSEIRCONN, epimodels::ModelSEIRD, epimodels::ModelSEIRDCONN, epimodels::ModelSEIRMixing, epimodels::ModelSEIRMixingQuarantine, epimodels::ModelSEIRNetworkQuarantine, epimodels::ModelSIR, epimodels::ModelSIRCONN, epimodels::ModelSIRD, epimodels::ModelSIRMixing, epiworld::Model, epiworld::epimodels::ModelSEIR, epiworld::epimodels::ModelSEIRCONN, epiworld::epimodels::ModelSEIRD, epiworld::epimodels::ModelSEIRDCONN, epiworld::epimodels::ModelSEIRMixing, epiworld::epimodels::ModelSEIRMixingQuarantine, epiworld::epimodels::ModelSEIRNetworkQuarantine, epiworld::epimodels::ModelSIR, epiworld::epimodels::ModelSIRCONN, epiworld::epimodels::ModelSIRD, epiworld::epimodels::ModelSIRMixing, measles::ModelMeaslesMixing, measles::ModelMeaslesMixingRiskQuarantine)
• initial_states_fun (Model, epimodels::Model, epiworld::Model)
• is_contact_tracing_on (Model, epimodels::Model, epiworld::Model)
• is_queuing_on (Model, epimodels::Model, epiworld::Model)
• is_running (Model, epimodels::Model, epiworld::Model)
• ISOLATED (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine, epimodels::ModelSEIRMixingQuarantine, epimodels::ModelSEIRNetworkQuarantine, epiworld::epimodels::ModelSEIRMixingQuarantine, epiworld::epimodels::ModelSEIRNetworkQuarantine, measles::ModelMeaslesMixing, measles::ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesSchool)
• ISOLATED_RECOVERED (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine, epimodels::ModelSEIRMixingQuarantine, epimodels::ModelSEIRNetworkQuarantine, epiworld::epimodels::ModelSEIRMixingQuarantine, epiworld::epimodels::ModelSEIRNetworkQuarantine, measles::ModelMeaslesMixing, measles::ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesSchool)
• isolation_willingness (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine, epimodels::ModelSEIRMixingQuarantine, epimodels::ModelSEIRNetworkQuarantine, epiworld::epimodels::ModelSEIRMixingQuarantine, epiworld::epimodels::ModelSEIRNetworkQuarantine, measles::ModelMeaslesMixing, measles::ModelMeaslesMixingRiskQuarantine)
• infectious (ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool, measles::ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesSchool)
• infectious_entity_indices (ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesMixingRiskQuarantine)
• INFECTED (ModelSEIR, ModelSEIRCONN, ModelSEIRD, ModelSEIRDCONN, ModelSEIRMixing, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine, ModelSIRCONN, ModelSIRDCONN, ModelSIRLogit, ModelSIRMixing, ModelSIS, epimodels::ModelSEIR, epimodels::ModelSEIRCONN, epimodels::ModelSEIRD, epimodels::ModelSEIRDCONN, epimodels::ModelSEIRMixing, epimodels::ModelSEIRMixingQuarantine, epimodels::ModelSEIRNetworkQuarantine, epimodels::ModelSIRCONN, epimodels::ModelSIRDCONN, epimodels::ModelSIRLogit, epimodels::ModelSIRMixing, epimodels::ModelSIS, epiworld::epimodels::ModelSEIR, epiworld::epimodels::ModelSEIRCONN, epiworld::epimodels::ModelSEIRD, epiworld::epimodels::ModelSEIRDCONN, epiworld::epimodels::ModelSEIRMixing, epiworld::epimodels::ModelSEIRMixingQuarantine, epiworld::epimodels::ModelSEIRNetworkQuarantine, epiworld::epimodels::ModelSIRCONN, epiworld::epimodels::ModelSIRDCONN, epiworld::epimodels::ModelSIRLogit, epiworld::epimodels::ModelSIRMixing, epiworld::epimodels::ModelSIS)
• infected (ModelSEIRCONN, ModelSEIRDCONN, ModelSIRCONN, epimodels::ModelSEIRCONN, epimodels::ModelSEIRDCONN, epimodels::ModelSIRCONN, epiworld::epimodels::ModelSEIRCONN, epiworld::epimodels::ModelSEIRDCONN, epiworld::epimodels::ModelSIRCONN)
• index (ModelSIRMixing, epimodels::ModelSIRMixing, epiworld::epimodels::ModelSIRMixing)
• iterator (NeighborsView::iterator, epimodels::NeighborsView::iterator, epiworld::NeighborsView::iterator)
• ids (NeighborsView, epimodels::NeighborsView, epiworld::NeighborsView)
• idx (ParamId, epiworld::ParamId)
• i (Progress, epiworld::Progress)
• is_available_for_contact (SamplerMixing, measles::SamplerMixing)
• incubation (Virus, epimodels::Virus, epiworld::Virus)
• infectious_states (epiworld::sampler::Mixing, sampler::Mixing)
• inv_available (epiworld::sampler::Mixing, sampler::Mixing)
• is_available (epiworld::sampler::Mixing, sampler::Mixing)
• is_infectious (epiworld::sampler::Mixing, sampler::Mixing)

j

• join (cli::Parser)

k

• k (UserData, epiworld::UserData)
• key (cli::Parser::Option)

l

• last_epoch (Bubbles, epiworld::Bubbles)
• location (Entity, epiworld::Entity)
• LFMCMC (LFMCMC, epiworld::LFMCMC)
• last_seed (Model, epimodels::Model, epiworld::Model)
• load_agents_entities_ties (Model, epimodels::Model, epiworld::Model)
• LATENT (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool, ModelSURV, epimodels::ModelSURV, epiworld::epimodels::ModelSURV, measles::ModelMeaslesMixing, measles::ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesSchool)
• last_loc (Progress, epiworld::Progress)
• last_day (UserData, epiworld::UserData)
• lineage_bit (Virus, epimodels::Virus, epiworld::Virus)
• lineage_id (Virus, epimodels::Virus, epiworld::Virus)

m

• mutate_virus (Agent, Model, epimodels::Agent, epimodels::Model, epiworld::Agent, epiworld::Model)
• model (AgentsSample, DataBase, Queue, UserData, epimodels::DataBase, epimodels::Queue, epiworld::AgentsSample, epiworld::DataBase, epiworld::Queue, epiworld::UserData)
• max_households (Bubbles, epiworld::Bubbles)
• model_id (Bubbles, InterventionMeaslesPEP, epiworld::Bubbles, measles::InterventionMeaslesPEP)
• marked (Bubbles::HeldTies, epiworld::Bubbles::HeldTies)
• m_contact_id (ContactRecord, epimodels::ContactRecord, epiworld::ContactRecord)
• m_times (ContactRecord, epimodels::ContactRecord, epiworld::ContactRecord)
• max_contacts (ContactTracing, epimodels::ContactTracing, epiworld::ContactTracing)
• m_hospitalizations (DataBase, epimodels::DataBase, epiworld::DataBase)
• max_capacity (Entity, epiworld::Entity)
• m_all_accepted_kernel_scores (LFMCMC, epiworld::LFMCMC)
• m_all_accepted_params (LFMCMC, epiworld::LFMCMC)
• m_all_accepted_stats (LFMCMC, epiworld::LFMCMC)
• m_all_sample_acceptance (LFMCMC, epiworld::LFMCMC)
• m_all_sample_drawn_prob (LFMCMC, epiworld::LFMCMC)
• m_all_sample_kernel_scores (LFMCMC, epiworld::LFMCMC)
• m_all_sample_params (LFMCMC, epiworld::LFMCMC)
• m_all_sample_stats (LFMCMC, epiworld::LFMCMC)
• m_current_accepted_params (LFMCMC, epiworld::LFMCMC)
• m_current_accepted_stats (LFMCMC, epiworld::LFMCMC)
• m_current_proposed_params (LFMCMC, epiworld::LFMCMC)
• m_current_proposed_stats (LFMCMC, epiworld::LFMCMC)
• m_elapsed_time (LFMCMC, epiworld::LFMCMC)
• m_end_time (LFMCMC, epiworld::LFMCMC)
• m_engine (LFMCMC, epiworld::LFMCMC)
• m_epsilon (LFMCMC, epiworld::LFMCMC)
• m_initial_params (LFMCMC, epiworld::LFMCMC)
• m_kernel_fun (LFMCMC, epiworld::LFMCMC)
• m_n_params (LFMCMC, epiworld::LFMCMC)
• m_n_samples (LFMCMC, epiworld::LFMCMC)
• m_n_stats (LFMCMC, epiworld::LFMCMC)
• m_observed_data (LFMCMC, epiworld::LFMCMC)
• m_observed_stats (LFMCMC, epiworld::LFMCMC)
• m_param_names (LFMCMC, epiworld::LFMCMC)
• m_proposal_fun (LFMCMC, epiworld::LFMCMC)
• m_simulated_data (LFMCMC, epiworld::LFMCMC)
• m_simulation_fun (LFMCMC, epiworld::LFMCMC)
• m_start_time (LFMCMC, epiworld::LFMCMC)
• m_stat_names (LFMCMC, epiworld::LFMCMC)
• m_summary_fun (LFMCMC, epiworld::LFMCMC)
• Model (Model, epimodels::Model, epiworld::Model)
• ModelDiagram (ModelDiagram, epiworld::ModelDiagram)
• ModelDiffNet (ModelDiffNet, epimodels::ModelDiffNet, epiworld::epimodels::ModelDiffNet)
• ModelMeaslesMixing (ModelMeaslesMixing, measles::ModelMeaslesMixing)
• ModelMeaslesMixingRiskQuarantine (ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesMixingRiskQuarantine)
• m_add_contact_tracing (ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesMixingRiskQuarantine)
• m_get_risk_period (ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesMixingRiskQuarantine)
• ModelMeaslesSchool (ModelMeaslesSchool, measles::ModelMeaslesSchool)
• ModelSEIR (ModelSEIR, epimodels::ModelSEIR, epiworld::epimodels::ModelSEIR)
• ModelSEIRCONN (ModelSEIRCONN, epimodels::ModelSEIRCONN, epiworld::epimodels::ModelSEIRCONN)
• ModelSEIRD (ModelSEIRD, epimodels::ModelSEIRD, epiworld::epimodels::ModelSEIRD)
• ModelSEIRDCONN (ModelSEIRDCONN, epimodels::ModelSEIRDCONN, epiworld::epimodels::ModelSEIRDCONN)
• ModelSEIRMixing (ModelSEIRMixing, epimodels::ModelSEIRMixing, epiworld::epimodels::ModelSEIRMixing)
• mixing (ModelSEIRMixing, ModelSEIRMixingQuarantine, ModelSIRMixing, epimodels::ModelSEIRMixing, epimodels::ModelSEIRMixingQuarantine, epimodels::ModelSIRMixing, epiworld::epimodels::ModelSEIRMixing, epiworld::epimodels::ModelSEIRMixingQuarantine, epiworld::epimodels::ModelSIRMixing)
• ModelSEIRMixingQuarantine (ModelSEIRMixingQuarantine, epimodels::ModelSEIRMixingQuarantine, epiworld::epimodels::ModelSEIRMixingQuarantine)
• ModelSEIRNetworkQuarantine (ModelSEIRNetworkQuarantine, epimodels::ModelSEIRNetworkQuarantine, epiworld::epimodels::ModelSEIRNetworkQuarantine)
• ModelSIR (ModelSIR, epimodels::ModelSIR, epiworld::epimodels::ModelSIR)
• ModelSIRCONN (ModelSIRCONN, epimodels::ModelSIRCONN, epiworld::epimodels::ModelSIRCONN)
• ModelSIRD (ModelSIRD, epimodels::ModelSIRD, epiworld::epimodels::ModelSIRD)
• ModelSIRDCONN (ModelSIRDCONN, epimodels::ModelSIRDCONN, epiworld::epimodels::ModelSIRDCONN)
• ModelSIRLogit (ModelSIRLogit, epimodels::ModelSIRLogit, epiworld::epimodels::ModelSIRLogit)
• ModelSIRMixing (ModelSIRMixing, epimodels::ModelSIRMixing, epiworld::epimodels::ModelSIRMixing)
• ModelSIS (ModelSIS, epimodels::ModelSIS, epiworld::epimodels::ModelSIS)
• ModelSISD (ModelSISD, epimodels::ModelSISD, epiworld::epimodels::ModelSISD)
• ModelSURV (ModelSURV, epimodels::ModelSURV, epiworld::epimodels::ModelSURV)
• MODEL (SAMPLETYPE, epiworld::SAMPLETYPE)
• mutate (Virus, epimodels::Virus, epiworld::Virus)
• mutation (Virus, epimodels::Virus, epiworld::Virus)
• ms (bench::Timing)
• max (epi_xoshiro256ss, epiworld::epi_xoshiro256ss)
• min (epi_xoshiro256ss, epiworld::epi_xoshiro256ss)
• Mixing (epiworld::sampler::Mixing, sampler::Mixing)
• marks (epiworld::sampler::Mixing, sampler::Mixing)

n

• N (AdjList, epiworld::AdjList)
• n_neighbors (Agent, epimodels::Agent, epiworld::Agent)
• neighbor_pos (Agent, epimodels::Agent, epiworld::Agent)
• neighbors (Agent, epimodels::Agent, epiworld::Agent)
• neighbors_view (Agent, epimodels::Agent, epiworld::Agent)
• n (AgentIdsView, NeighborsView, Progress, SampledContactsView, UserData, epimodels::AgentIdsView, epimodels::NeighborsView, epimodels::SampledContactsView, epiworld::AgentIdsView, epiworld::NeighborsView, epiworld::Progress, epiworld::SampledContactsView, epiworld::UserData)
• n_groups (ContactMatrix, epimodels::ContactMatrix, epiworld::ContactMatrix)
• n_agents (ContactTracing, epimodels::ContactTracing, epiworld::ContactTracing)
• new_state (Event, epimodels::Event, epiworld::Event)
• name (GlobalEvent, Model, ParamRef, epimodels::GlobalEvent, epimodels::Model, epiworld::GlobalEvent, epiworld::Model, epiworld::ParamRef)
• n_certain (Model::PushTarget, epimodels::Model::PushTarget, epiworld::Model::PushTarget)
• n_replicates (Model, epimodels::Model, epiworld::Model)
• nactions (Model, epimodels::Model, epiworld::Model)
• ndays (Model, epimodels::Model, epiworld::Model)
• next (Model, ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool, ModelSEIRMixingQuarantine, Progress, epimodels::Model, epimodels::ModelSEIRMixingQuarantine, epiworld::Model, epiworld::Progress, epiworld::epimodels::ModelSEIRMixingQuarantine, measles::ModelMeaslesMixing, measles::ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesSchool)
• nstates (Model, epimodels::Model, epiworld::Model)
• n_runs (ModelDiagram, epiworld::ModelDiagram)
• NONADOPTER (ModelDiffNet, epimodels::ModelDiffNet, epiworld::epimodels::ModelDiffNet)
• normalize_exposure (ModelDiffNet, epimodels::ModelDiffNet, epiworld::epimodels::ModelDiffNet)
• n_infectious_per_group (ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesMixingRiskQuarantine)
• NeighborsView (NeighborsView, epimodels::NeighborsView, epiworld::NeighborsView)
• nrow (OutputTable, UserData, epiworld::OutputTable, epiworld::UserData)
• NoOne (Queue, epimodels::Queue, epiworld::Queue)
• n_in_queue (Queue, epimodels::Queue, epiworld::Queue)
• notify_edge_added (Queue, epimodels::Queue, epiworld::Queue)
• notify_edge_removed (Queue, epimodels::Queue, epiworld::Queue)
• notify_edges_swapped (Queue, epimodels::Queue, epiworld::Queue)
• n_primary_infectious_per_group (SamplerMixing, measles::SamplerMixing)
• n_reduced_infectious_per_group (SamplerMixing, measles::SamplerMixing)
• ncol (UserData, epiworld::UserData)
• n_viruses (Viruses, Viruses_const, epimodels::Viruses, epimodels::Viruses_const, epiworld::Viruses, epiworld::Viruses_const)
• n_available (epiworld::sampler::Mixing, sampler::Mixing)

o

• operator() (AdjList, Agent, AgentsSample, Bubbles, GlobalEvent, InterventionMeaslesPEP, Model, ParamRef, SaverMemory, UserData, Viruses, Viruses_const, epi_xoshiro256ss, epimodels::Agent, epimodels::GlobalEvent, epimodels::Model, epimodels::Viruses, epimodels::Viruses_const, epiworld::AdjList, epiworld::Agent, epiworld::AgentsSample, epiworld::Bubbles, epiworld::GlobalEvent, epiworld::Model, epiworld::ParamRef, epiworld::SaverMemory, epiworld::UserData, epiworld::Viruses, epiworld::Viruses_const, epiworld::epi_xoshiro256ss, epiworld::sampler::UpdateSusceptible, epiworld::vecHasher, measles::InterventionMeaslesPEP, sampler::UpdateSusceptible, vecHasher)
• operator= (AdjList, Agent, Model, ParamRef, PostSamplingScratch, epimodels::Agent, epimodels::Model, epimodels::PostSamplingScratch, epiworld::AdjList, epiworld::Agent, epiworld::Model, epiworld::ParamRef, epiworld::PostSamplingScratch)
• operator!= (Agent, DataBase, Entity, GlobalEvent, Model, NeighborsView::iterator, Queue, Tool, Virus, epimodels::Agent, epimodels::DataBase, epimodels::GlobalEvent, epimodels::Model, epimodels::NeighborsView::iterator, epimodels::Queue, epimodels::Tool, epimodels::Virus, epiworld::Agent, epiworld::DataBase, epiworld::Entity, epiworld::GlobalEvent, epiworld::Model, epiworld::NeighborsView::iterator, epiworld::Queue, epiworld::Tool, epiworld::Virus)
• operator== (Agent, DataBase, Entity, GlobalEvent, Model, NeighborsView::iterator, Queue, Tool, Virus, epimodels::Agent, epimodels::DataBase, epimodels::GlobalEvent, epimodels::Model, epimodels::NeighborsView::iterator, epimodels::Queue, epimodels::Tool, epimodels::Virus, epiworld::Agent, epiworld::DataBase, epiworld::Entity, epiworld::GlobalEvent, epiworld::Model, epiworld::NeighborsView::iterator, epiworld::Queue, epiworld::Tool, epiworld::Virus)
• operator[] (AgentIdsView, AgentsSample, Entity, Queue, SampledContactsView, Viruses, Viruses_const, epimodels::AgentIdsView, epimodels::Queue, epimodels::SampledContactsView, epimodels::Viruses, epimodels::Viruses_const, epiworld::AgentIdsView, epiworld::AgentsSample, epiworld::Entity, epiworld::Queue, epiworld::SampledContactsView, epiworld::Viruses, epiworld::Viruses_const)
• odds (Model::PushTarget, epimodels::Model::PushTarget, epiworld::Model::PushTarget)
• operator* (NeighborsView::iterator, epimodels::NeighborsView::iterator, epiworld::NeighborsView::iterator)
• operator++ (NeighborsView::iterator, epimodels::NeighborsView::iterator, epiworld::NeighborsView::iterator)
• OnlySelf (Queue, epimodels::Queue, epiworld::Queue)
• operator+= (Queue, epimodels::Queue, epiworld::Queue)
• operator-= (Queue, epimodels::Queue, epiworld::Queue)
• options (cli::Parser)
• offsets (epiworld::sampler::Mixing, sampler::Mixing)
• ordered (epiworld::sampler::Mixing, sampler::Mixing)

p

• print (AdjList, Agent, ContactTracing, Entity, GlobalEvent, LFMCMC, Model, Tool, UserData, Virus, Viruses, Viruses_const, epimodels::Agent, epimodels::ContactTracing, epimodels::GlobalEvent, epimodels::Model, epimodels::Tool, epimodels::Virus, epimodels::Viruses, epimodels::Viruses_const, epiworld::AdjList, epiworld::Agent, epiworld::ContactTracing, epiworld::Entity, epiworld::GlobalEvent, epiworld::LFMCMC, epiworld::Model, epiworld::Tool, epiworld::UserData, epiworld::Virus, epiworld::Viruses, epiworld::Viruses_const)
• param_name (Bubbles, epiworld::Bubbles)
• partition_household (Bubbles, epiworld::Bubbles)
• partition_peer (Bubbles, epiworld::Bubbles)
• partner (Bubbles::HeldTies, epiworld::Bubbles::HeldTies)
• progress_bar (LFMCMC, epiworld::LFMCMC)
• par (Model, epimodels::Model, epiworld::Model)
• par_at (Model, epimodels::Model, epiworld::Model)
• param_index (Model, epimodels::Model, epiworld::Model)
• param_layout_id (Model, epimodels::Model, epiworld::Model)
• param_values (Model, epimodels::Model, epiworld::Model)
• params (Model, ModelDiffNet, epimodels::Model, epimodels::ModelDiffNet, epiworld::Model, epiworld::epimodels::ModelDiffNet)
• pb (Model, epimodels::Model, epiworld::Model)
• population (Model, epimodels::Model, epiworld::Model)
• population_backup (Model, epimodels::Model, epiworld::Model)
• population_left (Model, epimodels::Model, epiworld::Model)
• population_left_n (Model, epimodels::Model, epiworld::Model)
• post_sampling_dispatch (Model, epimodels::Model, epiworld::Model)
• post_sampling_fun (Model, epimodels::Model, epiworld::Model)
• post_sampling_on (Model, epimodels::Model, epiworld::Model)
• post_sampling_prepare_scratch (Model, epimodels::Model, epiworld::Model)
• post_sampling_scratch (Model, epimodels::Model, epiworld::Model)
• print_state_codes (Model, epimodels::Model, epiworld::Model)
• push_default (Model, epimodels::Model, epiworld::Model)
• push_excluded (Model, epimodels::Model, epiworld::Model)
• push_pushable (Model, epimodels::Model, epiworld::Model)
• push_slot (Model, epimodels::Model, epiworld::Model)
• push_source_ok (Model, epimodels::Model, epiworld::Model)
• push_sources (Model, epimodels::Model, epiworld::Model)
• push_targets (Model, epimodels::Model, epiworld::Model)
• push_visit (Model, epimodels::Model, epiworld::Model)
• PRODROMAL (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool, measles::ModelMeaslesMixing, measles::ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesSchool)
• pop (NeighborsView::iterator, NeighborsView, epimodels::NeighborsView::iterator, epimodels::NeighborsView, epiworld::NeighborsView::iterator, epiworld::NeighborsView)
• ptr (NeighborsView::iterator, epimodels::NeighborsView::iterator, epiworld::NeighborsView::iterator)
• ParamRef (ParamRef, epiworld::ParamRef)
• pname (ParamRef, epiworld::ParamRef)
• PostSamplingScratch (PostSamplingScratch, epimodels::PostSamplingScratch, epiworld::PostSamplingScratch)
• pairs (PostSamplingScratch, epimodels::PostSamplingScratch, epiworld::PostSamplingScratch)
• Progress (Progress, epiworld::Progress)
• primary_infectious (SamplerMixing, measles::SamplerMixing)
• primary_infectious_state (SamplerMixing, measles::SamplerMixing)
• pos_in_agent (Tool, epimodels::Tool, epiworld::Tool)
• post_recovery (Virus, epimodels::Virus, epiworld::Virus)
• post_recovery_fun (Virus, epimodels::Virus, epiworld::Virus)
• probability_of_death (Virus, epimodels::Virus, epiworld::Virus)
• probability_of_infecting (Virus, epimodels::Virus, epiworld::Virus)
• probability_of_recovery (Virus, epimodels::Virus, epiworld::Virus)
• Parser (cli::Parser)
• parse (cli::Parser)
• print_help (cli::Parser)
• push (cli::Parser)
• pool (epiworld::sampler::Mixing, sampler::Mixing)

q

• queue_init (Entity, Tool, Virus, epimodels::Tool, epimodels::Virus, epiworld::Entity, epiworld::Tool, epiworld::Virus)
• queue_post (Entity, Tool, Virus, epimodels::Tool, epimodels::Virus, epiworld::Entity, epiworld::Tool, epiworld::Virus)
• queue (Event, Model, epimodels::Event, epimodels::Model, epiworld::Event, epiworld::Model)
• queuing_off (Model, epimodels::Model, epiworld::Model)
• queuing_on (Model, epimodels::Model, epiworld::Model)
• QUARANTINED_LATENT (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool, measles::ModelMeaslesMixing, measles::ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesSchool)
• QUARANTINED_PRODROMAL (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool, measles::ModelMeaslesMixing, measles::ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesSchool)
• QUARANTINED_RECOVERED (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool, measles::ModelMeaslesMixing, measles::ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesSchool)
• QUARANTINED_SUSCEPTIBLE (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine, epimodels::ModelSEIRMixingQuarantine, epimodels::ModelSEIRNetworkQuarantine, epiworld::epimodels::ModelSEIRMixingQuarantine, epiworld::epimodels::ModelSEIRNetworkQuarantine, measles::ModelMeaslesMixing, measles::ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesSchool)
• QUARANTINE_PROCESS_ACTIVE (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine, epimodels::ModelSEIRMixingQuarantine, epimodels::ModelSEIRNetworkQuarantine, epiworld::epimodels::ModelSEIRMixingQuarantine, epiworld::epimodels::ModelSEIRNetworkQuarantine, measles::ModelMeaslesMixing, measles::ModelMeaslesMixingRiskQuarantine)
• QUARANTINE_PROCESS_DONE (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine, epimodels::ModelSEIRMixingQuarantine, epimodels::ModelSEIRNetworkQuarantine, epiworld::epimodels::ModelSEIRMixingQuarantine, epiworld::epimodels::ModelSEIRNetworkQuarantine, measles::ModelMeaslesMixing, measles::ModelMeaslesMixingRiskQuarantine)
• QUARANTINE_PROCESS_INACTIVE (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine, epimodels::ModelSEIRMixingQuarantine, epimodels::ModelSEIRNetworkQuarantine, epiworld::epimodels::ModelSEIRMixingQuarantine, epiworld::epimodels::ModelSEIRNetworkQuarantine, measles::ModelMeaslesMixing, measles::ModelMeaslesMixingRiskQuarantine)
• quarantine_willingness (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine, epimodels::ModelSEIRMixingQuarantine, epimodels::ModelSEIRNetworkQuarantine, epiworld::epimodels::ModelSEIRMixingQuarantine, epiworld::epimodels::ModelSEIRNetworkQuarantine, measles::ModelMeaslesMixing, measles::ModelMeaslesMixingRiskQuarantine)
• quarantine_risk_level (ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesMixingRiskQuarantine)
• QUARANTINED_EXPOSED (ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine, epimodels::ModelSEIRMixingQuarantine, epimodels::ModelSEIRNetworkQuarantine, epiworld::epimodels::ModelSEIRMixingQuarantine, epiworld::epimodels::ModelSEIRNetworkQuarantine)
• QuarantineTrigger (QuarantineTrigger, epiworld::QuarantineTrigger)
• queue_removed (Virus, epimodels::Virus, epiworld::Virus)

r

• read_edgelist (AdjList, epiworld::AdjList)
• reset (Agent, Bubbles, ContactTracing, DataBase, Entity, GlobalEvent, HospitalizationsTracker, Model, ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool, ModelSEIRCONN, ModelSEIRDCONN, ModelSEIRMixing, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine, ModelSIRCONN, ModelSIRLogit, ModelSIRMixing, ModelSURV, PostSamplingScratch, Queue, SamplerMixing, epimodels::Agent, epimodels::ContactTracing, epimodels::DataBase, epimodels::GlobalEvent, epimodels::Model, epimodels::ModelSEIRCONN, epimodels::ModelSEIRDCONN, epimodels::ModelSEIRMixing, epimodels::ModelSEIRMixingQuarantine, epimodels::ModelSEIRNetworkQuarantine, epimodels::ModelSIRCONN, epimodels::ModelSIRLogit, epimodels::ModelSIRMixing, epimodels::ModelSURV, epimodels::PostSamplingScratch, epimodels::Queue, epiworld::Agent, epiworld::Bubbles, epiworld::ContactTracing, epiworld::DataBase, epiworld::Entity, epiworld::GlobalEvent, epiworld::HospitalizationsTracker, epiworld::Model, epiworld::PostSamplingScratch, epiworld::Queue, epiworld::epimodels::ModelSEIRCONN, epiworld::epimodels::ModelSEIRDCONN, epiworld::epimodels::ModelSEIRMixing, epiworld::epimodels::ModelSEIRMixingQuarantine, epiworld::epimodels::ModelSEIRNetworkQuarantine, epiworld::epimodels::ModelSIRCONN, epiworld::epimodels::ModelSIRLogit, epiworld::epimodels::ModelSIRMixing, epiworld::epimodels::ModelSURV, epiworld::sampler::Mixing, measles::ModelMeaslesMixing, measles::ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesSchool, measles::SamplerMixing, sampler::Mixing)
• rm_agent_by_virus (Agent, epimodels::Agent, epiworld::Agent)
• rm_entity (Agent, Model, epimodels::Agent, epimodels::Model, epiworld::Agent, epiworld::Model)
• rm_neighbor (Agent, epimodels::Agent, epiworld::Agent)
• rm_tool (Agent, Model, epimodels::Agent, epimodels::Model, epiworld::Agent, epiworld::Model)
• rm_virus (Agent, Model, epimodels::Agent, epimodels::Model, epiworld::Agent, epiworld::Model)
• restore_network (Bubbles, epiworld::Bubbles)
• rewire_every (Bubbles, epiworld::Bubbles)
• record (DataBase, HospitalizationsTracker, epimodels::DataBase, epiworld::DataBase, epiworld::HospitalizationsTracker)
• record_hospitalization (DataBase, Model, epimodels::DataBase, epimodels::Model, epiworld::DataBase, epiworld::Model)
• record_tool (DataBase, epimodels::DataBase, epiworld::DataBase)
• record_transition (DataBase, epimodels::DataBase, epiworld::DataBase)
• record_transmission (DataBase, epimodels::DataBase, epiworld::DataBase)
• record_virus (DataBase, epimodels::DataBase, epiworld::DataBase)
• rm_agent (Entity, epiworld::Entity)
• rgamma (LFMCMC, Model, epimodels::Model, epiworld::LFMCMC, epiworld::Model)
• rgammad (LFMCMC, Model, epimodels::Model, epiworld::LFMCMC, epiworld::Model)
• rnorm (LFMCMC, Model, epimodels::Model, epiworld::LFMCMC, epiworld::Model)
• rnormd (LFMCMC, Model, epimodels::Model, epiworld::LFMCMC, epiworld::Model)
• run (LFMCMC, Model, epimodels::Model, epiworld::LFMCMC, epiworld::Model)
• runif (LFMCMC, Model, epimodels::Model, epiworld::LFMCMC, epiworld::Model)
• reset_stages (MeaslesStages, measles::MeaslesStages)
• rbinom (Model, epimodels::Model, epiworld::Model)
• rbinomd (Model, epimodels::Model, epiworld::Model)
• rbinomd_fast_lambda (Model, epimodels::Model, epiworld::Model)
• rbinomd_n (Model, epimodels::Model, epiworld::Model)
• rbinomd_use_poisson (Model, epimodels::Model, epiworld::Model)
• read_params (Model, epimodels::Model, epiworld::Model)
• recovery_enhancer_mixer (Model, epimodels::Model, epiworld::Model)
• register_sampled_contact (Model, epimodels::Model, epiworld::Model)
• register_sampled_contacts (Model, epimodels::Model, epiworld::Model)
• rewire (Model, epimodels::Model, epiworld::Model)
• rewire_fun (Model, epimodels::Model, epiworld::Model)
• rewire_prop (Model, epimodels::Model, epiworld::Model)
• rexp (Model, epimodels::Model, epiworld::Model)
• rexpd (Model, epimodels::Model, epiworld::Model)
• rgeom (Model, epimodels::Model, epiworld::Model)
• rgeomd (Model, epimodels::Model, epiworld::Model)
• rlognormal (Model, epimodels::Model, epiworld::Model)
• rlognormald (Model, epimodels::Model, epiworld::Model)
• rm_edge (Model, epimodels::Model, epiworld::Model)
• rm_globalevent (Model, epimodels::Model, epiworld::Model)
• rnbinom (Model, epimodels::Model, epiworld::Model)
• rnbinomd (Model, epimodels::Model, epiworld::Model)
• rpoiss (Model, epimodels::Model, epiworld::Model)
• rpoissd (Model, epimodels::Model, epiworld::Model)
• run_globalevents (Model, epimodels::Model, epiworld::Model)
• run_multiple (Model, epimodels::Model, epiworld::Model)
• runif_index (Model, epimodels::Model, epiworld::Model)
• runif_int (Model, epimodels::Model, epiworld::Model)
• runifd_a (Model, epimodels::Model, epiworld::Model)
• runifd_b (Model, epimodels::Model, epiworld::Model)
• running (Model, epimodels::Model, epiworld::Model)
• read_transitions (ModelDiagram, epiworld::ModelDiagram)
• RASH (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool, measles::ModelMeaslesMixing, measles::ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesSchool)
• RECOVERED (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool, ModelSEIRCONN, ModelSEIRMixing, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine, ModelSIRCONN, ModelSIRDCONN, ModelSIRLogit, ModelSIRMixing, ModelSURV, epimodels::ModelSEIRCONN, epimodels::ModelSEIRMixing, epimodels::ModelSEIRMixingQuarantine, epimodels::ModelSEIRNetworkQuarantine, epimodels::ModelSIRCONN, epimodels::ModelSIRDCONN, epimodels::ModelSIRLogit, epimodels::ModelSIRMixing, epimodels::ModelSURV, epiworld::epimodels::ModelSEIRCONN, epiworld::epimodels::ModelSEIRMixing, epiworld::epimodels::ModelSEIRMixingQuarantine, epiworld::epimodels::ModelSEIRNetworkQuarantine, epiworld::epimodels::ModelSIRCONN, epiworld::epimodels::ModelSIRDCONN, epiworld::epimodels::ModelSIRLogit, epiworld::epimodels::ModelSIRMixing, epiworld::epimodels::ModelSURV, measles::ModelMeaslesMixing, measles::ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesSchool)
• RISK_HIGH (ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesMixingRiskQuarantine)
• RISK_LOW (ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesMixingRiskQuarantine)
• RISK_MEDIUM (ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesMixingRiskQuarantine)
• REMOVED (ModelSEIR, ModelSEIRD, ModelSEIRDCONN, ModelSURV, epimodels::ModelSEIR, epimodels::ModelSEIRD, epimodels::ModelSEIRDCONN, epimodels::ModelSURV, epiworld::epimodels::ModelSEIR, epiworld::epimodels::ModelSEIRD, epiworld::epimodels::ModelSEIRDCONN, epiworld::epimodels::ModelSURV)
• reduced_contact_reduction_param (SamplerMixing, measles::SamplerMixing)
• reduced_infectious (SamplerMixing, measles::SamplerMixing)
• reduced_infectious_state (SamplerMixing, measles::SamplerMixing)
• results (SaverMemory, epiworld::SaverMemory)
• runs (SaverMemory::State, epiworld::SaverMemory::State)
• recovery_enhancer (Tool, epimodels::Tool, epiworld::Tool)
• result_type (epi_xoshiro256ss, epiworld::epi_xoshiro256ss)
• rotl (epi_xoshiro256ss, epiworld::epi_xoshiro256ss)

s

• set_virus (Agent, epimodels::Agent, epiworld::Agent)
• state (Agent, SaverMemory, epimodels::Agent, epiworld::Agent, epiworld::SaverMemory)
• state_last_changed (Agent, epimodels::Agent, epiworld::Agent)
• state_prev (Agent, epimodels::Agent, epiworld::Agent)
• swap_neighbors (Agent, epimodels::Agent, epiworld::Agent)
• size (AgentIdsView, AgentsSample, DataBase, Entity, HospitalizationsTracker, Model, NeighborsView, SampledContactsView, Viruses, Viruses_const, epimodels::AgentIdsView, epimodels::DataBase, epimodels::Model, epimodels::NeighborsView, epimodels::SampledContactsView, epimodels::Viruses, epimodels::Viruses_const, epiworld::AgentIdsView, epiworld::AgentsSample, epiworld::DataBase, epiworld::Entity, epiworld::HospitalizationsTracker, epiworld::Model, epiworld::NeighborsView, epiworld::SampledContactsView, epiworld::Viruses, epiworld::Viruses_const)
• sample_n (AgentsSample, epiworld::AgentsSample)
• sample_size (AgentsSample, epiworld::AgentsSample)
• sample_type (AgentsSample, epiworld::AgentsSample)
• states (AgentsSample, ModelDiagram, epiworld::AgentsSample, epiworld::ModelDiagram)
• set_ties (Bubbles, epiworld::Bubbles)
• start_day (Bubbles, epiworld::Bubbles)
• susceptibility_reduction (Bubbles, Tool, epimodels::Tool, epiworld::Bubbles, epiworld::Tool)
• sync_ties (Bubbles, epiworld::Bubbles)
• start (Bubbles::HeldTies, Progress, epiworld::Progress, epiworld::Bubbles::HeldTies)
• set_contact_matrix (ContactMatrix, epimodels::ContactMatrix, epiworld::ContactMatrix)
• sampling_freq (DataBase, epimodels::DataBase, epiworld::DataBase)
• seq_hasher (DataBase, epimodels::DataBase, epiworld::DataBase)
• seq_writer (DataBase, epimodels::DataBase, epiworld::DataBase)
• set_seq_hasher (DataBase, epimodels::DataBase, epiworld::DataBase)
• set_user_data (DataBase, Model, epimodels::DataBase, epimodels::Model, epiworld::DataBase, epiworld::Model)
• set_distribution (Entity, Tool, Virus, epimodels::Tool, epimodels::Virus, epiworld::Entity, epiworld::Tool, epiworld::Virus)
• set_location (Entity, epiworld::Entity)
• set_queue (Entity, Tool, Virus, epimodels::Tool, epimodels::Virus, epiworld::Entity, epiworld::Tool, epiworld::Virus)
• set_state (Entity, Tool, Virus, epimodels::Tool, epimodels::Virus, epiworld::Entity, epiworld::Tool, epiworld::Virus)
• state_init (Entity, Tool, Virus, epimodels::Tool, epimodels::Virus, epiworld::Entity, epiworld::Tool, epiworld::Virus)
• state_post (Entity, Tool, Virus, epimodels::Tool, epimodels::Virus, epiworld::Entity, epiworld::Tool, epiworld::Virus)
• set_day (GlobalEvent, epimodels::GlobalEvent, epiworld::GlobalEvent)
• set_name (GlobalEvent, Model, Tool, Virus, epimodels::GlobalEvent, epimodels::Model, epimodels::Tool, epimodels::Virus, epiworld::GlobalEvent, epiworld::Model, epiworld::Tool, epiworld::Virus)
• seed (LFMCMC, Model, epi_xoshiro256ss, epimodels::Model, epiworld::LFMCMC, epiworld::Model, epiworld::epi_xoshiro256ss)
• set_kernel_fun (LFMCMC, epiworld::LFMCMC)
• set_observed_data (LFMCMC, epiworld::LFMCMC)
• set_params_names (LFMCMC, epiworld::LFMCMC)
• set_proposal_fun (LFMCMC, epiworld::LFMCMC)
• set_rand_engine (LFMCMC, Model, epimodels::Model, epiworld::LFMCMC, epiworld::Model)
• set_rand_gamma (LFMCMC, Model, epimodels::Model, epiworld::LFMCMC, epiworld::Model)
• set_simulation_fun (LFMCMC, epiworld::LFMCMC)
• set_stats_names (LFMCMC, epiworld::LFMCMC)
• set_summary_fun (LFMCMC, epiworld::LFMCMC)
• Stage (MeaslesStages, measles::MeaslesStages)
• stage_end (MeaslesStages, measles::MeaslesStages)
• stage_infection (MeaslesStages, measles::MeaslesStages)
• stage_kind (MeaslesStages, measles::MeaslesStages)
• stage_of (MeaslesStages, measles::MeaslesStages)
• stage_over (MeaslesStages, measles::MeaslesStages)
• susceptible_degree (Model::TransmissionSums, epimodels::Model::TransmissionSums, epiworld::Model::TransmissionSums)
• susceptibles (Model::TransmissionSums, epimodels::Model::TransmissionSums, epiworld::Model::TransmissionSums)
• sample_from_probs (Model, epimodels::Model, epiworld::Model)
• sampled_population (Model, epimodels::Model, epiworld::Model)
• sampled_population_n (Model, epimodels::Model, epiworld::Model)
• set_agents_data (Model, epimodels::Model, epiworld::Model)
• set_backup (Model, epimodels::Model, epiworld::Model)
• set_ndays (Model, epimodels::Model, epiworld::Model)
• set_param (Model, epimodels::Model, epiworld::Model)
• set_param_at (Model, epimodels::Model, epiworld::Model)
• set_post_sampling (Model, epimodels::Model, epiworld::Model)
• set_rand_binom (Model, epimodels::Model, epiworld::Model)
• set_rand_exp (Model, epimodels::Model, epiworld::Model)
• set_rand_geom (Model, epimodels::Model, epiworld::Model)
• set_rand_lognormal (Model, epimodels::Model, epiworld::Model)
• set_rand_nbinom (Model, epimodels::Model, epiworld::Model)
• set_rand_norm (Model, epimodels::Model, epiworld::Model)
• set_rand_poiss (Model, epimodels::Model, epiworld::Model)
• set_rand_unif (Model, epimodels::Model, epiworld::Model)
• set_rewire_fun (Model, epimodels::Model, epiworld::Model)
• set_rewire_prop (Model, epimodels::Model, epiworld::Model)
• set_sim_id (Model, epimodels::Model, epiworld::Model)
• set_state_function (Model, epimodels::Model, epiworld::Model)
• set_transmission_mode (Model, epimodels::Model, epiworld::Model)
• sim_id (Model, epimodels::Model, epiworld::Model)
• state_carrier_degree (Model, epimodels::Model, epiworld::Model)
• state_carriers (Model, epimodels::Model, epiworld::Model)
• state_degree (Model, epimodels::Model, epiworld::Model)
• state_fun (Model, epimodels::Model, epiworld::Model)
• state_index_build (Model, epimodels::Model, epiworld::Model)
• state_index_degree (Model, epimodels::Model, epiworld::Model)
• state_index_members (Model, epimodels::Model, epiworld::Model)
• state_index_move (Model, epimodels::Model, epiworld::Model)
• state_index_ready (Model, epimodels::Model, epiworld::Model)
• state_index_update (Model, epimodels::Model, epiworld::Model)
• state_member_pos (Model, epimodels::Model, epiworld::Model)
• state_of (Model, epimodels::Model, epiworld::Model)
• state_order (Model, epimodels::Model, epiworld::Model)
• state_start (Model, epimodels::Model, epiworld::Model)
• states_labels (Model, epimodels::Model, epiworld::Model)
• susceptibility_reduction_mixer (Model, epimodels::Model, epiworld::Model)
• SUSCEPTIBLE (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool, ModelSEIR, ModelSEIRCONN, ModelSEIRD, ModelSEIRDCONN, ModelSEIRMixing, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine, ModelSIRCONN, ModelSIRDCONN, ModelSIRLogit, ModelSIRMixing, ModelSIS, ModelSURV, epimodels::ModelSEIR, epimodels::ModelSEIRCONN, epimodels::ModelSEIRD, epimodels::ModelSEIRDCONN, epimodels::ModelSEIRMixing, epimodels::ModelSEIRMixingQuarantine, epimodels::ModelSEIRNetworkQuarantine, epimodels::ModelSIRCONN, epimodels::ModelSIRDCONN, epimodels::ModelSIRLogit, epimodels::ModelSIRMixing, epimodels::ModelSIS, epimodels::ModelSURV, epiworld::epimodels::ModelSEIR, epiworld::epimodels::ModelSEIRCONN, epiworld::epimodels::ModelSEIRD, epiworld::epimodels::ModelSEIRDCONN, epiworld::epimodels::ModelSEIRMixing, epiworld::epimodels::ModelSEIRMixingQuarantine, epiworld::epimodels::ModelSEIRNetworkQuarantine, epiworld::epimodels::ModelSIRCONN, epiworld::epimodels::ModelSIRDCONN, epiworld::epimodels::ModelSIRLogit, epiworld::epimodels::ModelSIRMixing, epiworld::epimodels::ModelSIS, epiworld::epimodels::ModelSURV, measles::ModelMeaslesMixing, measles::ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesSchool)
• sampler (ModelMeaslesMixing, measles::ModelMeaslesMixing)
• sample_infectious_agents (ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesMixingRiskQuarantine)
• sampled_agents (ModelMeaslesMixingRiskQuarantine, SamplerMixing, measles::ModelMeaslesMixingRiskQuarantine, measles::SamplerMixing)
• SYMPTOMATIC (ModelSURV, epimodels::ModelSURV, epiworld::epimodels::ModelSURV)
• SYMPTOMATIC_ISOLATED (ModelSURV, epimodels::ModelSURV, epiworld::epimodels::ModelSURV)
• starts (PostSamplingScratch, epimodels::PostSamplingScratch, epiworld::PostSamplingScratch)
• step_size (Progress, epiworld::Progress)
• shift (Queue, epimodels::Queue, epiworld::Queue)
• SampledContactsView (SampledContactsView, epimodels::SampledContactsView, epiworld::SampledContactsView)
• SamplerMixing (SamplerMixing, measles::SamplerMixing)
• sample (SamplerMixing, epiworld::sampler::Mixing, measles::SamplerMixing, sampler::Mixing)
• SaverMemory (SaverMemory, epiworld::SaverMemory)
• set_agent (Tool, Virus, epimodels::Tool, epimodels::Virus, epiworld::Tool, epiworld::Virus)
• set_date (Tool, Virus, epimodels::Tool, epimodels::Virus, epiworld::Tool, epiworld::Virus)
• set_death_reduction (Tool, epimodels::Tool, epiworld::Tool)
• set_death_reduction_fun (Tool, epimodels::Tool, epiworld::Tool)
• set_id (Tool, Virus, epimodels::Tool, epimodels::Virus, epiworld::Tool, epiworld::Virus)
• set_recovery_enhancer (Tool, epimodels::Tool, epiworld::Tool)
• set_recovery_enhancer_fun (Tool, epimodels::Tool, epiworld::Tool)
• set_sequence (Tool, Virus, epimodels::Tool, epimodels::Virus, epiworld::Tool, epiworld::Virus)
• set_susceptibility_reduction (Tool, ToolImmunoglobulin, ToolVaccine, epimodels::Tool, epiworld::Tool, epiworld::ToolVaccine, measles::ToolImmunoglobulin)
• set_susceptibility_reduction_fun (Tool, ToolImmunoglobulin, ToolVaccine, epimodels::Tool, epiworld::Tool, epiworld::ToolVaccine, measles::ToolImmunoglobulin)
• set_targets (Tool, epimodels::Tool, epiworld::Tool)
• set_transmission_reduction (Tool, epimodels::Tool, epiworld::Tool)
• set_transmission_reduction_fun (Tool, epimodels::Tool, epiworld::Tool)
• set_incubation (Virus, epimodels::Virus, epiworld::Virus)
• set_incubation_fun (Virus, epimodels::Virus, epiworld::Virus)
• set_mutation (Virus, epimodels::Virus, epiworld::Virus)
• set_post_immunity (Virus, epimodels::Virus, epiworld::Virus)
• set_post_recovery (Virus, epimodels::Virus, epiworld::Virus)
• set_prob_death (Virus, epimodels::Virus, epiworld::Virus)
• set_prob_death_fun (Virus, epimodels::Virus, epiworld::Virus)
• set_prob_infecting (Virus, epimodels::Virus, epiworld::Virus)
• set_prob_infecting_fun (Virus, epimodels::Virus, epiworld::Virus)
• set_prob_recovery (Virus, epimodels::Virus, epiworld::Virus)
• set_prob_recovery_fun (Virus, epimodels::Virus, epiworld::Virus)
• state_removed (Virus, epimodels::Virus, epiworld::Virus)
• set (cli::Parser::Option)
• s (epi_xoshiro256ss, epiworld::epi_xoshiro256ss)
• splitmix64 (epi_xoshiro256ss, epiworld::epi_xoshiro256ss)
• sampled (epiworld::sampler::Mixing, sampler::Mixing)
• sampled_ids (epiworld::sampler::Mixing, sampler::Mixing)

t

• tools (Agent, Model, epimodels::Agent, epimodels::Model, epiworld::Agent, epiworld::Model)
• ties (Bubbles, epiworld::Bubbles)
• ties_epoch (Bubbles, epiworld::Bubbles)
• transmission_factor (Bubbles, epiworld::Bubbles)
• today_tool (DataBase, epimodels::DataBase, epiworld::DataBase)
• today_total (DataBase, epimodels::DataBase, epiworld::DataBase)
• today_total_nviruses_active (DataBase, epimodels::DataBase, epiworld::DataBase)
• today_virus (DataBase, epimodels::DataBase, epiworld::DataBase)
• tool_id (DataBase, epimodels::DataBase, epiworld::DataBase)
• tool_name (DataBase, Tool, epimodels::DataBase, epimodels::Tool, epiworld::DataBase, epiworld::Tool)
• tool_origin_date (DataBase, epimodels::DataBase, epiworld::DataBase)
• tool_sequence (DataBase, epimodels::DataBase, epiworld::DataBase)
• transition_matrix (DataBase, epimodels::DataBase, epiworld::DataBase)
• transmission_date (DataBase, epimodels::DataBase, epiworld::DataBase)
• transmission_source (DataBase, epimodels::DataBase, epiworld::DataBase)
• transmission_source_exposure_date (DataBase, epimodels::DataBase, epiworld::DataBase)
• transmission_target (DataBase, epimodels::DataBase, epiworld::DataBase)
• transmission_virus (DataBase, epimodels::DataBase, epiworld::DataBase)
• tool (Event, epimodels::Event, epiworld::Event)
• time_elapsed (Model, epimodels::Model, epiworld::Model)
• time_end (Model, epimodels::Model, epiworld::Model)
• time_start (Model, epimodels::Model, epiworld::Model)
• today (Model, epimodels::Model, epiworld::Model)
• transmission_choose_push (Model, epimodels::Model, epiworld::Model)
• transmission_kappa (Model, epimodels::Model, epiworld::Model)
• transmission_mode (Model, epimodels::Model, epiworld::Model)
• transmission_mode_last (Model, epimodels::Model, epiworld::Model)
• transmission_prepare (Model, epimodels::Model, epiworld::Model)
• transmission_push (Model, epimodels::Model, epiworld::Model)
• transmission_push_impl (Model, epimodels::Model, epiworld::Model)
• transmission_reduction_mixer (Model, epimodels::Model, epiworld::Model)
• transmission_update_others (Model, epimodels::Model, epiworld::Model)
• tprob (ModelDiagram, epiworld::ModelDiagram)
• transition_probability (ModelDiagram, epiworld::ModelDiagram)
• touched (PostSamplingScratch, epimodels::PostSamplingScratch, epiworld::PostSamplingScratch)
• tracks (Queue, epimodels::Queue, epiworld::Queue)
• Tool (Tool, epimodels::Tool, epiworld::Tool)
• target_bit (Tool, epimodels::Tool, epiworld::Tool)
• target_mask (Tool, epimodels::Tool, epiworld::Tool)
• targets (Tool, epimodels::Tool, epiworld::Tool)
• transmission_reduction (Tool, epimodels::Tool, epiworld::Tool)
• ToolImmunoglobulin (ToolImmunoglobulin, measles::ToolImmunoglobulin)
• ToolVaccine (ToolVaccine, epiworld::ToolVaccine)

u

• up_to_date (ContactTracing, epimodels::ContactTracing, epiworld::ContactTracing)
• update_state (DataBase, Model, epimodels::DataBase, epimodels::Model, epiworld::DataBase, epiworld::Model)
• update_tool (DataBase, epimodels::DataBase, epiworld::DataBase)
• update_virus (DataBase, epimodels::DataBase, epiworld::DataBase)
• user_data (DataBase, epimodels::DataBase, epiworld::DataBase)
• use_contact_tracing (Model, epimodels::Model, epiworld::Model)
• use_queuing (Model, epimodels::Model, epiworld::Model)
• using_backup (Model, epimodels::Model, epiworld::Model)
• update_exposed_seir (ModelSEIR, ModelSEIRD, epimodels::ModelSEIR, epimodels::ModelSEIRD, epiworld::epimodels::ModelSEIR, epiworld::epimodels::ModelSEIRD)
• update_infected (ModelSEIRCONN, ModelSEIRD, ModelSEIRDCONN, ModelSIRCONN, epimodels::ModelSEIRCONN, epimodels::ModelSEIRD, epimodels::ModelSEIRDCONN, epimodels::ModelSIRCONN, epiworld::epimodels::ModelSEIRCONN, epiworld::epimodels::ModelSEIRD, epiworld::epimodels::ModelSEIRDCONN, epiworld::epimodels::ModelSIRCONN)
• update (SamplerMixing, epiworld::sampler::Mixing, measles::SamplerMixing, sampler::Mixing)
• UserData (UserData, epiworld::UserData)
• UpdateSusceptible (epiworld::sampler::UpdateSusceptible, sampler::UpdateSusceptible)

v

• vcount (AdjList, epiworld::AdjList)
• virus (Agent, Event, epimodels::Agent, epimodels::Event, epiworld::Agent, epiworld::Event)
• validate_contact_matrix (ContactMatrix, epimodels::ContactMatrix, epiworld::ContactMatrix)
• virus_id (DataBase, epimodels::DataBase, epiworld::DataBase)
• virus_name (DataBase, Virus, epimodels::DataBase, epimodels::Virus, epiworld::DataBase, epiworld::Virus)
• virus_origin_date (DataBase, epimodels::DataBase, epiworld::DataBase)
• virus_parent_id (DataBase, epimodels::DataBase, epiworld::DataBase)
• virus_sequence (DataBase, epimodels::DataBase, epiworld::DataBase)
• verbose (LFMCMC, Model, epimodels::Model, epiworld::LFMCMC, epiworld::Model)
• verbose_off (LFMCMC, Model, epimodels::Model, epiworld::LFMCMC, epiworld::Model)
• verbose_on (LFMCMC, Model, epimodels::Model, epiworld::LFMCMC, epiworld::Model)
• viruses (Model, epimodels::Model, epiworld::Model)
• Virus (Virus, epimodels::Virus, epiworld::Virus)
• Viruses (Viruses, epimodels::Viruses, epiworld::Viruses)
• Viruses_const (Viruses_const, epimodels::Viruses_const, epiworld::Viruses_const)

w

• wants_ties (Bubbles, epiworld::Bubbles)
• withdraw_ties (Bubbles, epiworld::Bubbles)
• write_data (DataBase, Model, epimodels::DataBase, epimodels::Model, epiworld::DataBase, epiworld::Model)
• write_edgelist (Model, epimodels::Model, epiworld::Model)
• width (Progress, epiworld::Progress)
• whats (SaverMemory::State, epiworld::SaverMemory::State)
• write (UserData, epiworld::UserData)

~

• ~Agent (Agent, epimodels::Agent, epiworld::Agent)
• ~AgentsSample (AgentsSample, epiworld::AgentsSample)
• ~Entity (Entity, epiworld::Entity)
• ~GlobalEvent (GlobalEvent, epimodels::GlobalEvent, epiworld::GlobalEvent)
• ~LFMCMC (LFMCMC, epiworld::LFMCMC)
• ~Model (Model, epimodels::Model, epiworld::Model)
• ~Progress (Progress, epiworld::Progress)
• ~Tool (Tool, epimodels::Tool, epiworld::Tool)
• ~Virus (Virus, epimodels::Virus, epiworld::Virus)

_

• _event_name (BubbleTool, epiworld::BubbleTool)
• _policy (BubbleTool, epiworld::BubbleTool)
• _setup (Bubbles, InterventionMeaslesPEP, QuarantineTrigger, epiworld::Bubbles, epiworld::QuarantineTrigger, measles::InterventionMeaslesPEP)
• _date (HospitalizationsTracker, epiworld::HospitalizationsTracker)
• _tool_id (HospitalizationsTracker, epiworld::HospitalizationsTracker)
• _virus_id (HospitalizationsTracker, epiworld::HospitalizationsTracker)
• _weight (HospitalizationsTracker, epiworld::HospitalizationsTracker)
• _agent_groups (InterventionMeaslesPEP, measles::InterventionMeaslesPEP)
• _group_of (InterventionMeaslesPEP, measles::InterventionMeaslesPEP)
• _ig_efficacy (InterventionMeaslesPEP, measles::InterventionMeaslesPEP)
• _ig_half_life_mean (InterventionMeaslesPEP, measles::InterventionMeaslesPEP)
• _ig_half_life_sd (InterventionMeaslesPEP, measles::InterventionMeaslesPEP)
• _ig_willingness (InterventionMeaslesPEP, measles::InterventionMeaslesPEP)
• _mmr_efficacy (InterventionMeaslesPEP, measles::InterventionMeaslesPEP)
• _mmr_willingness (InterventionMeaslesPEP, measles::InterventionMeaslesPEP)
• _next_if_effective (InterventionMeaslesPEP, measles::InterventionMeaslesPEP)
• _next_if_ineffective (InterventionMeaslesPEP, measles::InterventionMeaslesPEP)
• _par_half_life_mean (InterventionMeaslesPEP, ToolImmunoglobulin, measles::InterventionMeaslesPEP, measles::ToolImmunoglobulin)
• _par_half_life_sd (InterventionMeaslesPEP, ToolImmunoglobulin, measles::InterventionMeaslesPEP, measles::ToolImmunoglobulin)
• _par_ig_efficacy (InterventionMeaslesPEP, measles::InterventionMeaslesPEP)
• _par_ig_willingness (InterventionMeaslesPEP, measles::InterventionMeaslesPEP)
• _par_mmr_efficacy (InterventionMeaslesPEP, measles::InterventionMeaslesPEP)
• _par_mmr_willingness (InterventionMeaslesPEP, measles::InterventionMeaslesPEP)
• _par_pep_ig_window (InterventionMeaslesPEP, measles::InterventionMeaslesPEP)
• _par_pep_mmr_window (InterventionMeaslesPEP, measles::InterventionMeaslesPEP)
• _pep_ig_window (InterventionMeaslesPEP, measles::InterventionMeaslesPEP)
• _pep_mmr_window (InterventionMeaslesPEP, measles::InterventionMeaslesPEP)
• _states_if_pep_effective (InterventionMeaslesPEP, measles::InterventionMeaslesPEP)
• _states_if_pep_ineffective (InterventionMeaslesPEP, measles::InterventionMeaslesPEP)
• _target_states (InterventionMeaslesPEP, measles::InterventionMeaslesPEP)
• _to_receive_pep (InterventionMeaslesPEP, measles::InterventionMeaslesPEP)
• _willing_to_receive_ig (InterventionMeaslesPEP, measles::InterventionMeaslesPEP)
• _willing_to_receive_mmr (InterventionMeaslesPEP, measles::InterventionMeaslesPEP)
• _add_event (Model, epimodels::Model, epiworld::Model)
• _event_add_entity (Model, epimodels::Model, epiworld::Model)
• _event_add_tool (Model, epimodels::Model, epiworld::Model)
• _event_add_virus (Model, epimodels::Model, epiworld::Model)
• _event_change_state (Model, epimodels::Model, epiworld::Model)
• _event_rm_entity (Model, epimodels::Model, epiworld::Model)
• _event_rm_tool (Model, epimodels::Model, epiworld::Model)
• _event_rm_virus (Model, epimodels::Model, epiworld::Model)
• _quarantine_process (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine, epimodels::ModelSEIRMixingQuarantine, epimodels::ModelSEIRNetworkQuarantine, epiworld::epimodels::ModelSEIRMixingQuarantine, epiworld::epimodels::ModelSEIRNetworkQuarantine, measles::ModelMeaslesMixing, measles::ModelMeaslesMixingRiskQuarantine)
• _update_hospitalized (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine, epimodels::ModelSEIRMixingQuarantine, epimodels::ModelSEIRNetworkQuarantine, epiworld::epimodels::ModelSEIRMixingQuarantine, epiworld::epimodels::ModelSEIRNetworkQuarantine, measles::ModelMeaslesMixing, measles::ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesSchool)
• _update_infectious_list (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesMixing, measles::ModelMeaslesMixingRiskQuarantine)
• _update_isolated (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine, epimodels::ModelSEIRMixingQuarantine, epimodels::ModelSEIRNetworkQuarantine, epiworld::epimodels::ModelSEIRMixingQuarantine, epiworld::epimodels::ModelSEIRNetworkQuarantine, measles::ModelMeaslesMixing, measles::ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesSchool)
• _update_isolated_recovered (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine, epimodels::ModelSEIRMixingQuarantine, epimodels::ModelSEIRNetworkQuarantine, epiworld::epimodels::ModelSEIRMixingQuarantine, epiworld::epimodels::ModelSEIRNetworkQuarantine, measles::ModelMeaslesMixing, measles::ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesSchool)
• _update_latent (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool, measles::ModelMeaslesMixing, measles::ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesSchool)
• _update_prodromal (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool, measles::ModelMeaslesMixing, measles::ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesSchool)
• _update_quarantine_latent (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesMixing, measles::ModelMeaslesMixingRiskQuarantine)
• _update_quarantine_prodromal (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesMixing, measles::ModelMeaslesMixingRiskQuarantine)
• _update_quarantine_recovered (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesMixing, measles::ModelMeaslesMixingRiskQuarantine)
• _update_quarantine_suscep (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine, epimodels::ModelSEIRMixingQuarantine, epimodels::ModelSEIRNetworkQuarantine, epiworld::epimodels::ModelSEIRMixingQuarantine, epiworld::epimodels::ModelSEIRNetworkQuarantine, measles::ModelMeaslesMixing, measles::ModelMeaslesMixingRiskQuarantine)
• _update_rash (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool, measles::ModelMeaslesMixing, measles::ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesSchool)
• _update_susceptible (ModelMeaslesMixing, ModelMeaslesMixingRiskQuarantine, ModelMeaslesSchool, ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine, epimodels::ModelSEIRMixingQuarantine, epimodels::ModelSEIRNetworkQuarantine, epiworld::epimodels::ModelSEIRMixingQuarantine, epiworld::epimodels::ModelSEIRNetworkQuarantine, measles::ModelMeaslesMixing, measles::ModelMeaslesMixingRiskQuarantine, measles::ModelMeaslesSchool)
• _quarantine_agents (ModelMeaslesSchool, measles::ModelMeaslesSchool)
• _update_infectious (ModelMeaslesSchool, measles::ModelMeaslesSchool)
• _update_q_latent (ModelMeaslesSchool, measles::ModelMeaslesSchool)
• _update_q_prodromal (ModelMeaslesSchool, measles::ModelMeaslesSchool)
• _update_q_recovered (ModelMeaslesSchool, measles::ModelMeaslesSchool)
• _update_q_susceptible (ModelMeaslesSchool, measles::ModelMeaslesSchool)
• _update_exposed (ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine, epimodels::ModelSEIRMixingQuarantine, epimodels::ModelSEIRNetworkQuarantine, epiworld::epimodels::ModelSEIRMixingQuarantine, epiworld::epimodels::ModelSEIRNetworkQuarantine)
• _update_infected (ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine, epimodels::ModelSEIRMixingQuarantine, epimodels::ModelSEIRNetworkQuarantine, epiworld::epimodels::ModelSEIRMixingQuarantine, epiworld::epimodels::ModelSEIRNetworkQuarantine)
• _update_quarantine_exposed (ModelSEIRMixingQuarantine, ModelSEIRNetworkQuarantine, epimodels::ModelSEIRMixingQuarantine, epimodels::ModelSEIRNetworkQuarantine, epiworld::epimodels::ModelSEIRMixingQuarantine, epiworld::epimodels::ModelSEIRNetworkQuarantine)
• _agents_triggering_quarantine (QuarantineTrigger, epiworld::QuarantineTrigger)
• _date_infectious (QuarantineTrigger, epiworld::QuarantineTrigger)
• _day (QuarantineTrigger, epiworld::QuarantineTrigger)
• _model_sim_id (QuarantineTrigger, epiworld::QuarantineTrigger)
• _error_method (ToolImmunoglobulin, measles::ToolImmunoglobulin)
• _immune (ToolImmunoglobulin, ToolVaccine, epiworld::ToolVaccine, measles::ToolImmunoglobulin)
• _par_efficacy (ToolImmunoglobulin, measles::ToolImmunoglobulin)
• _removal_time (ToolImmunoglobulin, measles::ToolImmunoglobulin)
• _remove_tool (ToolImmunoglobulin, measles::ToolImmunoglobulin)
• _set_immunity (ToolImmunoglobulin, ToolVaccine, epiworld::ToolVaccine, measles::ToolImmunoglobulin)
• _efficacy (ToolVaccine, epiworld::ToolVaccine)