File config.hpp¶

FileList > epiworld > config.hpp

Classes¶

Type	Name
struct	Event <typename TSeq> Event data for update an agent.

Public Types¶

Type	Name
typedef std::shared_ptr< Entity< TSeq > >	EntityPtr
typedef std::function< void(Entity< TSeq > &, Model< TSeq > *)>	EntityToAgentFun Decides how to distribute entities at initialization.
enum uint8_t	EventAction
typedef std::function< void(Event< TSeq > &, Model< TSeq > *)>	EventFun
typedef std::shared_ptr< GlobalEvent< TSeq > >	GlobalEventPtr
typedef std::function< void(Model< TSeq > *)>	GlobalFun
typedef std::function< epiworld_double(Agent< TSeq > , VirusPtr< TSeq > &, Model< TSeq > )>	MixerFun
typedef std::function< bool(Agent< TSeq > , Virus< TSeq > &, Model< TSeq > )>	MutFun
typedef std::function< void(Agent< TSeq > , Virus< TSeq > &, Model< TSeq > )>	PostRecoveryFun
typedef std::function< epiworld_double(Tool< TSeq > &, Agent< TSeq > , VirusPtr< TSeq > &, Model< TSeq > )>	ToolFun
typedef std::shared_ptr< Tool< TSeq > >	ToolPtr
typedef std::function< void(Tool< TSeq > &, Model< TSeq > *)>	ToolToAgentFun Decides how to distribute tools at initialization.
typedef std::function< void(Agent< TSeq > , Model< TSeq > )>	UpdateFun
typedef std::function< epiworld_double(Agent< TSeq > , Virus< TSeq > &, Model< TSeq > )>	VirusFun
typedef std::shared_ptr< Virus< TSeq > >	VirusPtr
typedef std::function< void(Virus< TSeq > &, Model< TSeq > *)>	VirusToAgentFun Decides how to distribute viruses at initialization.

Macros¶

Type	Name
define	DEFAULT_TOOL_CONTAGION_REDUCTION `0.0`
define	DEFAULT_TOOL_DEATH_REDUCTION `0.0`
define	DEFAULT_TOOL_RECOVERY_ENHANCER `0.0`
define	DEFAULT_TOOL_TRANSMISSION_REDUCTION `0.0`
define	EPIWORLD_MAXNEIGHBORS `1048576`
define	EPI_CHECK_USER_INTERRUPT (a)
define	EPI_DEBUG_ALL_NON_NEGATIVE (vect)
define	EPI_DEBUG_ERROR (fmt, ...)
define	EPI_DEBUG_FAIL_AT_TRUE (a, b) `/* multi line expression */`
define	EPI_DEBUG_NOTIFY_ACTIVE ()
define	EPI_DEBUG_PRINTF (fmt, ...)
define	EPI_DEBUG_SUM_DBL (vect, num)
define	EPI_DEBUG_SUM_INT (vect, num)
define	EPI_DEBUG_VECTOR_MATCH_INT (a, b, c)
define	EPI_DEFAULT_INCUBATION_DAYS `7.0`
define	EPI_DEFAULT_TSEQ `int`
define	EPI_DEFAULT_VIRUS_PROB_DEATH `0.0`
define	EPI_DEFAULT_VIRUS_PROB_INFECTION `1.0`
define	EPI_DEFAULT_VIRUS_PROB_RECOVERY `0.1428`
define	EPI_GET_THREAD_ID () `0`
define	EPI_MAX_TRACKING `200`
define	epiexception (a) `a`
define	epiworld_double `float`
define	epiworld_fast_int `int`
define	epiworld_fast_uint `unsigned long long int`
define	printf_epiworld `fflush(stdout);printf`

Public Types Documentation¶

typedef EntityPtr¶

using EntityPtr =  std::shared_ptr< Entity< TSeq > >;

typedef EntityToAgentFun¶

Decides how to distribute entities at initialization.

using EntityToAgentFun =  std::function<void(Entity<TSeq>&,Model<TSeq>*)>;

enum EventAction¶

enum EventAction {
    AddVirus,
    AddTool,
    AddEntity,
    RemoveVirus,
    RemoveTool,
    RemoveEntity,
    ChangeState
};

typedef EventFun¶

using EventFun =  std::function<void(Event<TSeq>&,Model<TSeq>*)>;

typedef GlobalEventPtr¶

using GlobalEventPtr =  std::shared_ptr< GlobalEvent< TSeq > >;

typedef GlobalFun¶

using GlobalFun =  std::function<void(Model<TSeq>*)>;

typedef MixerFun¶

using MixerFun =  std::function<epiworld_double(Agent<TSeq>*,VirusPtr<TSeq>&,Model<TSeq>*)>;

typedef MutFun¶

using MutFun =  std::function<bool(Agent<TSeq>*,Virus<TSeq>&,Model<TSeq>*)>;

typedef PostRecoveryFun¶

using PostRecoveryFun =  std::function<void(Agent<TSeq>*,Virus<TSeq>&,Model<TSeq>*)>;

typedef ToolFun¶

using ToolFun =  std::function<epiworld_double(Tool<TSeq>&,Agent<TSeq>*,VirusPtr<TSeq>&,Model<TSeq>*)>;

typedef ToolPtr¶

using ToolPtr =  std::shared_ptr< Tool< TSeq > >;

typedef ToolToAgentFun¶

Decides how to distribute tools at initialization.

using ToolToAgentFun =  std::function<void(Tool<TSeq>&,Model<TSeq>*)>;

typedef UpdateFun¶

using UpdateFun =  std::function<void(Agent<TSeq>*,Model<TSeq>*)>;

typedef VirusFun¶

using VirusFun =  std::function<epiworld_double(Agent<TSeq>*,Virus<TSeq>&,Model<TSeq>*)>;

typedef VirusPtr¶

using VirusPtr =  std::shared_ptr< Virus< TSeq > >;

typedef VirusToAgentFun¶

Decides how to distribute viruses at initialization.

using VirusToAgentFun =  std::function<void(Virus<TSeq>&,Model<TSeq>*)>;

Macro Definition Documentation¶

define DEFAULT_TOOL_CONTAGION_REDUCTION¶

#define DEFAULT_TOOL_CONTAGION_REDUCTION `0.0`

define DEFAULT_TOOL_DEATH_REDUCTION¶

#define DEFAULT_TOOL_DEATH_REDUCTION `0.0`

define DEFAULT_TOOL_RECOVERY_ENHANCER¶

#define DEFAULT_TOOL_RECOVERY_ENHANCER `0.0`

define DEFAULT_TOOL_TRANSMISSION_REDUCTION¶

#define DEFAULT_TOOL_TRANSMISSION_REDUCTION `0.0`

define EPIWORLD_MAXNEIGHBORS¶

#define EPIWORLD_MAXNEIGHBORS `1048576`

define EPI_CHECK_USER_INTERRUPT¶

#define EPI_CHECK_USER_INTERRUPT (
    a
)

define EPI_DEBUG_ALL_NON_NEGATIVE¶

#define EPI_DEBUG_ALL_NON_NEGATIVE (
    vect
)

define EPI_DEBUG_ERROR¶

#define EPI_DEBUG_ERROR (
    fmt,
    ...
)

define EPI_DEBUG_FAIL_AT_TRUE¶

#define EPI_DEBUG_FAIL_AT_TRUE (
    a,
    b
) `/* multi line expression */`

define EPI_DEBUG_NOTIFY_ACTIVE¶

#define EPI_DEBUG_NOTIFY_ACTIVE (

)

define EPI_DEBUG_PRINTF¶

#define EPI_DEBUG_PRINTF (
    fmt,
    ...
)

define EPI_DEBUG_SUM_DBL¶

#define EPI_DEBUG_SUM_DBL (
    vect,
    num
)

define EPI_DEBUG_SUM_INT¶

#define EPI_DEBUG_SUM_INT (
    vect,
    num
)

define EPI_DEBUG_VECTOR_MATCH_INT¶

#define EPI_DEBUG_VECTOR_MATCH_INT (
    a,
    b,
    c
)

define EPI_DEFAULT_INCUBATION_DAYS¶

#define EPI_DEFAULT_INCUBATION_DAYS `7.0`

define EPI_DEFAULT_TSEQ¶

#define EPI_DEFAULT_TSEQ `int`

define EPI_DEFAULT_VIRUS_PROB_DEATH¶

#define EPI_DEFAULT_VIRUS_PROB_DEATH `0.0`

define EPI_DEFAULT_VIRUS_PROB_INFECTION¶

#define EPI_DEFAULT_VIRUS_PROB_INFECTION `1.0`

define EPI_DEFAULT_VIRUS_PROB_RECOVERY¶

#define EPI_DEFAULT_VIRUS_PROB_RECOVERY `0.1428`

define EPI_GET_THREAD_ID¶

#define EPI_GET_THREAD_ID (

) `0`

define EPI_MAX_TRACKING¶

#define EPI_MAX_TRACKING `200`

define epiexception¶

#define epiexception (
    a
) `a`

define epiworld_double¶

#define epiworld_double `float`

define epiworld_fast_int¶

#define epiworld_fast_int `int`

define epiworld_fast_uint¶

#define epiworld_fast_uint `unsigned long long int`

define printf_epiworld¶

#define printf_epiworld `fflush(stdout);printf`

The documentation for this class was generated from the following file epiworld-src/include/epiworld/config.hpp