Package index
-
ModelDiffNet()
plot(<epiworld_diffnet>)
- Network Diffusion Model
-
ModelSEIR()
plot(<epiworld_seir>)
- Susceptible Exposed Infected Recovered model (SEIR)
-
ModelSEIRCONN()
plot(<epiworld_seirconn>)
- Susceptible Exposed Infected Removed model (SEIR connected)
-
ModelSEIRD()
plot(<epiworld_seird>)
- Susceptible-Exposed-Infected-Recovered-Deceased model (SEIRD)
-
ModelSEIRDCONN()
plot(<epiworld_seirdconn>)
- Susceptible Exposed Infected Removed Deceased model (SEIRD connected)
-
ModelSEIRMixing()
plot(<epiworld_seirmixing>)
- Susceptible Exposed Infected Removed model (SEIR) with mixing
-
ModelSIR()
plot(<epiworld_sir>)
- SIR model
-
ModelSIRCONN()
plot(<epiworld_sirconn>)
- Susceptible Infected Removed model (SIR connected)
-
ModelSIRD()
plot(<epiworld_sird>)
- SIRD model
-
ModelSIRDCONN()
plot(<epiworld_sirdconn>)
- Susceptible Infected Removed Deceased model (SIRD connected)
-
ModelSIRLogit()
- SIR Logistic model
-
ModelSIRMixing()
plot(<epiworld_sirmixing>)
- Susceptible Infected Removed model (SIR) with mixing
-
ModelSIS()
plot(<epiworld_sis>)
- SIS model
-
ModelSISD()
plot(<epiworld_sisd>)
- SISD model
-
ModelSURV()
plot(<epiworld_surv>)
- SURV model
-
get_agents()
`[`(<epiworld_agents>)
print(<epiworld_agent>)
print(<epiworld_agents>)
get_state()
- Agents in epiworldR
-
agents_smallworld()
agents_from_edgelist()
get_network()
get_agents_states()
add_virus_agent()
add_tool_agent()
has_virus()
has_tool()
change_state()
get_agents_tools()
- Load agents to a model
-
get_entities()
`[`(<epiworld_entities>)
entity()
get_entity_size()
get_entity_name()
entity_add_agent()
rm_entity()
add_entity()
load_agents_entities_ties()
entity_get_agents()
distribute_entity_randomly()
distribute_entity_to_set()
set_distribution_entity()
- Get entities
-
get_hist_total()
get_today_total()
get_hist_virus()
get_hist_tool()
get_transition_probability()
get_reproductive_number()
plot(<epiworld_repnum>)
plot_reproductive_number()
get_hist_transition_matrix()
as.array(<epiworld_hist_transition>)
plot_incidence()
plot(<epiworld_hist_transition>)
get_transmissions()
get_generation_time()
plot(<epiworld_generation_time>)
plot_generation_time()
- Accessing the database of epiworld
-
queuing_on()
queuing_off()
verbose_off()
verbose_on()
run()
summary(<epiworld_model>)
get_states()
get_param()
set_param()
set_name()
get_name()
get_n_viruses()
get_n_tools()
get_ndays()
get_n_replicates()
size()
set_agents_data()
get_agents_data_ncols()
get_virus()
get_tool()
initial_states()
clone_model()
- Methods for epiworldR objects
-
add_tool_n()
add_virus_n()
globalaction_tool()
globalaction_tool_logit()
globalaction_set_params()
globalaction_fun()
- Deprecated and removed functions in epiworldR
-
epiworldR
epiworldR-package
- epiworldR
-
globalevent_tool()
globalevent_tool_logit()
globalevent_set_params()
globalevent_fun()
add_globalevent()
- Global Actions
-
run_multiple()
run_multiple_get_results()
make_saver()
- Run multiple simulations at once
-
tool()
set_name_tool()
get_name_tool()
add_tool()
rm_tool()
tool_fun_logit()
set_susceptibility_reduction()
set_susceptibility_reduction_ptr()
set_susceptibility_reduction_fun()
set_transmission_reduction()
set_transmission_reduction_ptr()
set_transmission_reduction_fun()
set_recovery_enhancer()
set_recovery_enhancer_ptr()
set_recovery_enhancer_fun()
set_death_reduction()
set_death_reduction_ptr()
set_death_reduction_fun()
print(<epiworld_agents_tools>)
set_distribution_tool()
distribute_tool_randomly()
distribute_tool_to_set()
- Tools in epiworld
-
virus()
set_name_virus()
get_name_virus()
add_virus()
virus_set_state()
rm_virus()
virus_fun_logit()
set_prob_infecting()
set_prob_infecting_ptr()
set_prob_infecting_fun()
set_prob_recovery()
set_prob_recovery_ptr()
set_prob_recovery_fun()
set_prob_death()
set_prob_death_ptr()
set_prob_death_fun()
set_incubation()
set_incubation_ptr()
set_incubation_fun()
set_distribution_virus()
distribute_virus_randomly()
distribute_virus_set()
- Virus design