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All functions

ModelDiffNet() plot(<epiworld_diffnet>)
Network Diffusion Model
ModelSEIR() plot(<epiworld_seir>)
Susceptible Exposed Infected Recovered model (SEIR)
ModelSEIRCONN() plot(<epiworld_seirconn>)
Susceptible Exposed Infected Removed model (SEIR connected)
ModelSEIRD() plot(<epiworld_seird>)
Susceptible-Exposed-Infected-Recovered-Deceased model (SEIRD)
ModelSEIRDCONN() plot(<epiworld_seirdconn>)
Susceptible Exposed Infected Removed Deceased model (SEIRD connected)
ModelSEIRMixing() plot(<epiworld_seirmixing>)
Susceptible Exposed Infected Removed model (SEIR) with mixing
ModelSIR() plot(<epiworld_sir>)
SIR model
ModelSIRCONN() plot(<epiworld_sirconn>)
Susceptible Infected Removed model (SIR connected)
ModelSIRD() plot(<epiworld_sird>)
SIRD model
ModelSIRDCONN() plot(<epiworld_sirdconn>)
Susceptible Infected Removed Deceased model (SIRD connected)
ModelSIRLogit()
SIR Logistic model
ModelSIRMixing() plot(<epiworld_sirmixing>)
Susceptible Infected Removed model (SIR) with mixing
ModelSIS() plot(<epiworld_sis>)
SIS model
ModelSISD() plot(<epiworld_sisd>)
SISD model
ModelSURV() plot(<epiworld_surv>)
SURV model
get_agents() `[`(<epiworld_agents>) print(<epiworld_agent>) print(<epiworld_agents>) get_state()
Agents in epiworldR
agents_smallworld() agents_from_edgelist() get_network() get_agents_states() add_virus_agent() add_tool_agent() has_virus() has_tool() change_state() get_agents_tools()
Load agents to a model
get_entities() `[`(<epiworld_entities>) entity() get_entity_size() get_entity_name() entity_add_agent() rm_entity() add_entity() load_agents_entities_ties() entity_get_agents() distribute_entity_randomly() distribute_entity_to_set() set_distribution_entity()
Get entities
get_hist_total() get_today_total() get_hist_virus() get_hist_tool() get_transition_probability() get_reproductive_number() plot(<epiworld_repnum>) plot_reproductive_number() get_hist_transition_matrix() as.array(<epiworld_hist_transition>) plot_incidence() plot(<epiworld_hist_transition>) get_transmissions() get_generation_time() plot(<epiworld_generation_time>) plot_generation_time()
Accessing the database of epiworld
queuing_on() queuing_off() verbose_off() verbose_on() run() summary(<epiworld_model>) get_states() get_param() set_param() set_name() get_name() get_n_viruses() get_n_tools() get_ndays() get_n_replicates() size() set_agents_data() get_agents_data_ncols() get_virus() get_tool() initial_states() clone_model()
Methods for epiworldR objects
add_tool_n() add_virus_n() globalaction_tool() globalaction_tool_logit() globalaction_set_params() globalaction_fun()
Deprecated and removed functions in epiworldR
epiworldR epiworldR-package
epiworldR
globalevent_tool() globalevent_tool_logit() globalevent_set_params() globalevent_fun() add_globalevent()
Global Actions
run_multiple() run_multiple_get_results() make_saver()
Run multiple simulations at once
tool() set_name_tool() get_name_tool() add_tool() rm_tool() tool_fun_logit() set_susceptibility_reduction() set_susceptibility_reduction_ptr() set_susceptibility_reduction_fun() set_transmission_reduction() set_transmission_reduction_ptr() set_transmission_reduction_fun() set_recovery_enhancer() set_recovery_enhancer_ptr() set_recovery_enhancer_fun() set_death_reduction() set_death_reduction_ptr() set_death_reduction_fun() print(<epiworld_agents_tools>) set_distribution_tool() distribute_tool_randomly() distribute_tool_to_set()
Tools in epiworld
virus() set_name_virus() get_name_virus() add_virus() virus_set_state() rm_virus() virus_fun_logit() set_prob_infecting() set_prob_infecting_ptr() set_prob_infecting_fun() set_prob_recovery() set_prob_recovery_ptr() set_prob_recovery_fun() set_prob_death() set_prob_death_ptr() set_prob_death_fun() set_incubation() set_incubation_ptr() set_incubation_fun() set_distribution_virus() distribute_virus_randomly() distribute_virus_set()
Virus design